GgaEX0027141 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7119478-7137592:+
Coord C1 exon
chr10:7119478-7119514
Coord A exon
chr10:7127507-7127552
Coord C2 exon
chr10:7133712-7137592
Length
46 bp
Sequences
Splice sites
3' ss Seq
CTTAATTCATTGTCCACTAGGTT
3' ss Score
6.67
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTTCTGTAGATTTACCAACTGCTGAACAAGTATCTGA
Seq A exon
GTTAAAGACTGAAATCTCCATTAGAGAGAAAGAAGCTAAGTTGGAG
Seq C2 exon
CAAACAGGGGCTTGATTCTTCAGAGGAAACAAAAGAAGGCAATAGAAACCAAAATGAAGTTGCATCAGTTGAAAAGAATGAAGAAAACTCATCATTGTCAGACACAGAAAATGTTCCCAATTTGGAACTCCCTGATAACAGCACGAAGAAATCTTTGCATGGGAAAGGAACACGTTGTGATTCAGATCATCACAAACAATTAGTAGGAGAGAAACAAAAATGTATTCATGGAGAAAGTGAGTTGAAAACTTGCCAAAGTTCAGATTATGTTGTCTTGACTGATCAGACTAAAGTGCAAAACTTGGATAAAACTACACTTTCAGCAATGAATGCAAGGGACTTAAAGCTAACTTTGGGTGAAGATGTTAGTTTTGAGCAGTTCTTGCGAAAAAGAAATGAACCTGAATCAGTTAATTCAGACATGAGTGAACAAGGCAGTATTCATTTGGAGCCTTTGACTCCGTCAGAGGTACTAGAGCATGAAGCAACTGAAATTCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375_MULTIEX1-15/16=13-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.231 C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000023225fB2571
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACTGCTGAACAAGTATCTGA
R:
TGGGAACATTTTCTGTGTCTGACA
Band lengths:
143-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]