GgaINT1002104 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7129741-7131756:+
Coord C1 exon
chr10:7129741-7129785
Coord A exon
chr10:7129786-7131742
Coord C2 exon
chr10:7131743-7131756
Length
1957 bp
Sequences
Splice sites
5' ss Seq
AATGTATGA
5' ss Score
2.55
3' ss Seq
ATAGAGTTGGTTTTTCATATAAA
3' ss Score
-7.08
Exon sequences
Seq C1 exon
AAAATTTCAAGACGTAGTTTATCTGAAGGAAAAACAAACACCAAT
Seq A exon
GTATGAAAGGTAATACAATAATGAGCTGCATCTTGAAATTCAATTACATAAAATAATACATGCTGTGTTTTTTCTCAGGTAATGGGATGAGAATATTTTAATTAACGTTTTCATAATGTGTTTTCTATGACAAACTTTTGAGTGGCAGTCATAATGTACTCAAAGACACAGAGTTGAGGTTCTAAATGTCAAAACAGTGCTTAACCTACACATTAAGGTTTGTGATAAATTGTACACAGTGTTAAAAGGATTTTTCTTGTATTATTGTGCACGAATTAACATCGTTGAAAGGGAAAATGGGGAACAGCTATAACATACAGCAGTAAATGCTAATCCATGGGAATTCATTTTGTTGGGTAGCTGTAACAACTACAGATCTAGGGAAAATTATAATGGCATGTTTTTAATGTCCGTCTGGGAAAATAAATGAAATTTTACATGGCTTTGGGCACACAGTGTGGACAGACTTATTAACGTATATGCACATATATGTACTTCAGATCCCATGGCCTTGAAATATCTCACTCCAATTAGTAGTCTTCAACAATTTTGATGCTAATTTAACCTTTAAAGCTTAGTCAAAACATTCCTTCAGTCCTTGTACATTTGTAGTACCTTTTTTAAAAAAGTAAATTGAAAAGTAAGTTAAAAAAGCAGTCATGTGCTTTCTGTTTCTCTCAATAGGTTATTTTTCTTCTTAGAAAAGGTTCTCCGTTACCTTTCTTTAGTCATATGCAGAGTACCAAATAATTAGAATTTTACTTACAGTGCTTAAGAATTGAGACTAAATGGTTCAGATATTAGGAGCTAACTCCATCTTTAAACAGATAAGATACAGATAAGCTATTATAATTGAATGCTATGTACTACGTTCTCCTATCTTTCTGTTTAATTAGATAAAATTAACTTTAAGATATAAGCCTATTCTTTATTTCCTGTTGGTTGGATTCTTGAGGACTCTGCTAGGAGTTTGAGCTTGTTTGGTGCATTCATGGATCAGAGCTTCCAGCTCAGCTTCCTCAAAAAGAAATCTAGCTTGCATACACCAGAACAGTTCTGTAAACCAAAGCAGTGTGTAGGAACAGTTAGGAATTTGCCTCAAAACCATGCTGTTGGTTCATACCAAAGTGATGTACCAAAGTAAATGCAGCCTGAGTACTGATTTTATTACCTCTAAGTACAGCCCACAAACTGAGGGTCTTCATGTGAATACCTTGCAGCTATTGTGTGTGCAGTTACGTAAATGTCACCTGATGCTTTCTTTTCTTACTATAAATTTTTTTCATGAATGGCTTTTAGAAGCTTAATACAAAATACTAATGCTCTAAAGAACATTAAGTGAAGAGAGTTGTTGGAGAGTTACCCAATATAAAGGAGTTTTATGTGTTTACTGATGTGTTTAGCAATACTAGATCAGTGTTTTCTGTATATTTGTTTTTGTGATGTTTATTGCCTTGCAAAAACTGAGCAGTTTTATTTTTAAACTTTTACTGGTATAAAACATTGGGGAGGTTTTTCTTCTGCATGAGAAATGAATGTAGAAAGGTTTTCTTCCTCCCCATTCCACACTTTCTGCGCTTCACCAAAAATGAGTTGATAGTGAAGAAGGTTGGATTTGGTTGAAGTTGGGGTTTGATTGCAAGAAGATAAGAGAGATTGTGATGGATTTCCATTTTATGTTAAAGTAGGTTTGTCCTTTAAGAATTTCTTGGTGTGAATGGTGTGTAAATTTAATACATCTGGAGTGCCCTGTGTGGAAACATTGTCAGTGCTAATGAGGAAATTACTCATTGCTTTATGTAAACCCATTTTTGCATACCTGTGTTCAAAAGTTGCCAAGTAAAGCATACTATTTTGCTTGTTAACTCTGCAACTTCAGCTCACTTCCAAGCTGCTTGTTGAAAAGTAGCAGCAAAAGGTCATGTATATACAGTTTCATAGAGTTGGTTTTTCATAT
Seq C2 exon
AAATGTAGTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]