GgaINT0028088 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NIC1]
Coordinates
chr10:7131743-7137592:+
Coord C1 exon
chr10:7131743-7131756
Coord A exon
chr10:7131757-7133711
Coord C2 exon
chr10:7133712-7137592
Length
1955 bp
Sequences
Splice sites
5' ss Seq
TAAGTACTT
5' ss Score
-1.39
3' ss Seq
ATAATATTTTGTTTTTTCAGCAA
3' ss Score
8.41
Exon sequences
Seq C1 exon
AAATGTAGTTCTAA
Seq A exon
GTACTTACTAGAATTTCTAAGGCTCTGTGTAGCTAAAGTATTTTTCTGGAATAGGTGAGGTAATTAGGAACAGGTGTGATAAGGCTAATTATCATCCATAGCTGCTGGGTTGTGAGCCTAGCTCCTGTGGAGGAACTTTGTCTCAAGCTTTCTCTGAATCATTACATTTTCTTTCTTTTCTAGTAGTTTGGGACGGAGGAGAATAATTTGGATAGAAAAAATGTGTATTGGAGAGTATCGTTTATTGTGTTAGTCTAATAAGTGAAGAAAGCATACACATTTGTCTGTCAGTAGTAGCTAATGCAAATTATAATTTGGCAAATAGGTTCACCTCCTGAGTTAATTCCTGATTATTAATGAAGAAATGGTGTCACAGTGAAATTATTATTATGACCACCTCAGTAGGCAGTAAGAGTCCAACATTTAAGATCATCTTGTAGTCTCTCAGTCCATTCAAAATATTCCTGTGTCTTAAACCTAAGTAGAAAGTTGGATATTCTTGAATTAGCTTCTTTGAGTGAAAGTAAAACTTGAAAACAAACTTCTGAGTGTTTGTAGCTTGTAGTACCTGGACCAGACTAAACATTTGCTGTGCAATTCAGTATCACTTAGCATGTAGGTAGATCACTTTTGGTTTGAAAATATATTGTAAAAATTTAATAGCAGGAATCTGGTTGTTTCCTGAAAGACTTCTTGAGCTGTCCATTGCTTAGCAAGTGGGTTTAGCCAGAAGTGGTTTCAAGCATATTTAAAACTATTTGAAAAGAGTACAGAAGCTTTTTTGATCCTTCTAATACTTGACAGTGCCGTCTCTCTTGCATTTCTTATCTGCATATTACTGTTCAGATGCTATTTGCAACTTTTAGGCTCAAACATGAAACTGGGAGATGTACTCGCTCCAAATTGCACTTCCCATATAGAATTTGTCTGAAATCCAGCTTGTTCTTCCATCCCCTCTGCCACCTTTCACTGTTTTTATTTTTTTTTGTCTATTAAACGTCGCCATTTAGGGCAGTTAGAGCTACTTGTCATTCTGAAAAGTCTTGAGTGGGTTTCAAATTATGATTTTACCAAGCCTAAATCTTTACGGCAAAAAGAGCTTCCTCATTGAAATGATGAGAGAAGCTTGATGTTCCTATAACAAATGAAGAGAAATATTGGGAAGGAGGGTTTTGTCCGCTGGAATGTGAACACGAGCAGTTTGCATACAGCATGTGACTAAGAGTTTTTGTTGGTAAAGGTGACATCTGAAATACATAGTTGAATCTCTTTGAAGGATTCTCATACCTCTCCCACTTCCCTTTCCTGATCACCTTACAGAACTGCACGTGGCTTTATTGAAATAATACAAAATTAGGCAATAACTACTTTGTATAAATTTTATGTTGTTTTTTATGTTATTGTATAAGATTCTCATTTTTACTTGCATGAGTCAACACTGTTCTTTCCTTTTATTTATCACCATGTGGTTTTACTGTGAAAAGTGACTAAAAATGCTCTTTCACCAATTTACTTATTGAAATAATGCAAATTTCTAGTTGATGAACTAAATTTTAGATTTGAATTGTGATTTCCAAAAGCTAGCTTTTTTCTTTCTTGACACCCATTGACAGTGCAGATTCAATTTGTCAGTATAAAGGTATGAACTGGCTTATTTTTCTTGCACATTATCAGAAGCTTTGATTAGTGTCAAAGAAGAGCTTGGTGCTGTATTTTTAGAAATTCCACATGAGAAGAAGGAAGCAACCTTCGTTTCTAGTGATGAAATGCAAGAATTAAAGAATACCAAAGCTGTAAGAAAAATGCATTTGTTAAATTCAGCCCATCTTGCTATGAAAATTTTAAAGAAATAACAAATAGGAAATCTGCAATGCCACTTTGGGTGTTACTTTGCGGAGTATAGCCACGTGTTGCTGTATTATAACTTTTAGAAAAATAATATTTTGTTTTTTCAG
Seq C2 exon
CAAACAGGGGCTTGATTCTTCAGAGGAAACAAAAGAAGGCAATAGAAACCAAAATGAAGTTGCATCAGTTGAAAAGAATGAAGAAAACTCATCATTGTCAGACACAGAAAATGTTCCCAATTTGGAACTCCCTGATAACAGCACGAAGAAATCTTTGCATGGGAAAGGAACACGTTGTGATTCAGATCATCACAAACAATTAGTAGGAGAGAAACAAAAATGTATTCATGGAGAAAGTGAGTTGAAAACTTGCCAAAGTTCAGATTATGTTGTCTTGACTGATCAGACTAAAGTGCAAAACTTGGATAAAACTACACTTTCAGCAATGAATGCAAGGGACTTAAAGCTAACTTTGGGTGAAGATGTTAGTTTTGAGCAGTTCTTGCGAAAAAGAAATGAACCTGAATCAGTTAATTCAGACATGAGTGAACAAGGCAGTATTCATTTGGAGCCTTTGACTCCGTCAGAGGTACTAGAGCATGAAGCAACTGAAATTCTTCAGAAAGGTAATATTGCACCTTCATCAAAGCAAGCTGAACAACTCTCTGAACAAACAGACAAGACTTCTCAAGAAGGCAGTCCCAGCAGAATGGAAACAACTGTAAACAAAACGGATGAAAATGAAGCAAGCTGAAATTACGTTCATTTCCTTGTGTATTATATAATGATAGGAACACCATGGACCATTCCTGATGAGTGTGCTCATTGATGCTAATAGTTTGGGGTTTTTTTTTTTGAAAGGGAAATTTGACATAATAATAGAGATAATATACGTGTGTGCACAACTGAATCAAGTAAATTTAGAAGGGTAATGTGTTTTTAAAAGTTTATCTGCCTGTTTCTTCTCATATATCTGAATAAACTGACAGTTGAAAGGAGGAAAAAATTCTATTTTTTGTATCTGGAATAAGATTCTTTGTTAGCCAAGAGAAGATTTTTAAAACTCTTCTAATGAAACAGCAGATCTTAGTACAAATTCAGTTCTAATGCTGAAATGAAGCACACTTGTAGCAATGGTTGTTGGTCTGCTGATAGCTGGGTAAACACAAGCTTTGGATTTGGTATCACATTCCTGTCTGTAAAAGCATGTAAACAATTATATGAATCTATGCACCTCTGTACAGGTGTAATCCTGCCAGACTGTAGACTTACCTTAAACTTTCAGTGAAAGTGGAAATATTACAATAAAATATATATATTTGTGGGGTTTTCAGTATGCAGACTGTGCAGAAATACCAGACATAATTGTAAAAAGTAGGACATACTGCTAAAAGTACTGTAGCTTTTAGGCTTTTACCATTGTTTTAAATATTCTTAGTGGTAGACCCATAGGAATGGTCTGTAAGGCAAACCAAAGTATGGTTTAATGTAAAAATTGTTTTAAGCAAGAAGAAGGAAAACCCCAAACTGGAAGTACCAGCTGGCATGCATTCTGCCGTTTTGCAGCTGCTACTTGCGAACTCTTAGAAAAAAGGACACGAGAGCATATAACGTGAGAATGTACAGTTCAATTTCACGACTTTTTGTAGTCTAAGTTATATTCAGAAAGATAGCTGCTGGGTTTTTTGTTGTTTTTTTTATAGTTAGCAGTTAGGTGTAGAAATGAATATGACAGTAGCTTGCTCTTACAACTTCCTTGCTCCATTTGAAACATTCAGAATGTGCTTTTGACCTAGTTTTGTTTTTAATGTGTTAAATGTTTTGAACAGCTGTTAAAGCACTGCTGTAAATTATTACTTTTTTGAGTAAATATTTGCAACAAAATTTTGTCTTTGTGAATAATTTCACTGCTCAGCTTGAAACTTTGGGCATAATATTCCCACCTTTTTATAAAAGATTTGGTAGCAGTTTGCAGGAACAATTTCATTTCAAAATTTTCTTTTTAAAATTGTGAGTTTGATGCTTAAGTAATTTTTTTTCTTTTTTTGTTTTTAAGAATTAAATGAGCAAGTGCCTATGCATAAGAATATTTTTCTAGCTGTGTATTGTGGTTAGATGTGCTAACTTTTCCAGATTATAGAGATATTTTTCCGGACCATCAGCATGCAATTGAAGTTCTTTCTGTCCTTCTGGGTTGACTAGACTTGGCTTCTAAATGAGTCTAATCAGCTACAGCATTAACGTATAGAGACCATCCCGCTTGTTGAAGCCTCCAAGTAAACCGCATCTCAAATATTGCTTAGAACTCTGAGGAGTCCCATGAATTAAATTTTAAATTGCTGCTTAATTTTCATCCACGTTGATATAGAAGCCTTTTTAAGAGAAAAGTGGAATGACTTACACAGTCCCAGCTGACAAGCTCTTCTGCTTAAAGAGCTCCAAATAAGATAAAATAAAAACAGACAAAAAAGCTGAGAACAGTAAGTTGCAATATTCTTCTGTCCTTTAAAGGTTGTAGTGAAATTGTTAATTTGAGGTGTTATTAACAAGTCTGTTGTCTTCATGCGTGTAGACACGAGGGAATAAAAGCGTCTGAAGAAGGATAGCTCAAAGGAGTAAACCAGCTGTAGAACTTCTTGTGTATGTTACTGAAGCAGCTCATGAGTGCGTATAAACCAAGAGAAACCTGTGATATTTTTAATCAGAACGTTGATTTTTACATGCCAATTAAATATTTTGAAAAATTCGTATGTGGTGTTGGAAAAGATTCACTTCAAGTGGAACCAGTTGTATGATACTTGCTTGTAATTTCCTCACACTTGTCTTCTATGCGATTAAATTTTTTAAATATTTTCCATTTTATTAATATGAATTTGGATGAAAACGTAGTTAGAATGCCCCATACTTTTGAGAATGTGGAAAATCAAACTGAGACTGGAAAAACCTGAGTATTTGACAAAAATATATGTGAATTCTCAGACACTTATTATGTAGAGGGTTGTTCATTTCAGTCTGTGTAGAGAATGCACATACATTACAGCATTGATGTTAGGTCTAAAACCACCCAGATGTCTAACATCTGAAATAGCAACCCTTCCAAATGGAGCAAGAGAGTACTAGATAGTTGTAGCCAGACCATCAGACGGTTTAAATAGACGATTAAGTTGTATAATGAAAGCAGTGGTATGCTATTTTTGTGAAGAACGAAGAATGTATTTGTTTTTCCTATCTGAAGAAATCTGTTATCTAAACTGCAGGAGATTGCATAATTATGAAAATTAATCCCTTTCATGTATTCTGTGTGGTTCCTAGAGCGAAGCTAAATAGATGCTTTTGGCTTAAGTCACTCCAAAATATAATTTACACTGACTGCATTTGAGTTATTTGTATGTAACTGCACATAACTCATTTTTTTGGTTGTTTCTGTGTCATGGGAAAGTTTTTTTTATTCTTCAGCCATCAGCAGTTCTTTCTCTGTGCCATCTTTTCTTTGAACTTAGGAGAATGCTGTACCTCAGGTTTACATTACCTTGCCAAAAAAGTAACTTCAATTTAATTCTTGATGTCCATACTAGAATATATGTTTCACTTCTGGAGAGATTAACAATATTTACTTGAATAATTTCATATTGGATATGTAACTTACTATTCTTGAAGAAGATACATGCCATGTGCATGTTAACATTAGTTCTGTTTGGTTAAAAGCTACTGAAAATCAGTAGCTTACGGTCGTTTGGTGCTTCCTCAAGTGCAGTGAATGCCTCAGTTTGTCTTGCGCAGTTTGGGCAAAAAAATACTGCTTTTGGACTACTTTGTAAAGGGTTGTAGACAAATTCCTGTTGTTTCAGGGGGAGAAAGCATTGCCAGAAGAGGAATAGGCACAGTATACCCAACAGCTGCAAGTCGTGAAGCTATTGGATGTGAGTCTATTCACTTTTTATGGCTGAATCTCCAGAGATGTTACAGGTTCTGTTTATTTCAATCAACCGCTGTCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]