RnoINT0167984 @ rn6
Intron Retention
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78945939-78948377:+
Coord C1 exon
chr8:78945939-78945994
Coord A exon
chr8:78945995-78947584
Coord C2 exon
chr8:78947585-78948377
Length
1590 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATAAGCGGCTTTGTTTTCAGTAA
3' ss Score
5.69
Exon sequences
Seq C1 exon
GAAACAGCAAGACATAGTACAGCTGAAAGAGAACCAGGAGCATCACATTCTGAAAG
Seq A exon
GTAAGAATAAGGGAAAAATAAGACTCTTGATTAATTTAATGAAACAAATTAATATTTGACCTAAATTATATTTCACTGACAGCTGGCAATTTTCTCTATTAAATGAAAACAGTTATAGGATACTACAGATTATGGGATTGGACAATTAAATTATGTAATTTTCTTATTTTTATCTTTATATTTTATAGTACGCTATTTGCTAATCTGTTGAGAATAACAACCTACCCCACAAACAAAAGTAAAGTGTTGAGACTGTATCAAGATGTTTTTGGTTTTTACTAGTAAAATAATCTAGCCTCCTTACATCTTTATCCTAGAGTTCTGAGCAATGAGGTTGAACAAAATGTCACCTAAGCAGTAGGAAAATAAACGCATCATCTGTATATTACTCAGTAGTCTGTCAAATGTGATCTGAACAAAAATGATTGTCTGATACATGGACAAAAGGGTCTTTTTTTTTTAAGATTTATTTTATTTATATGACTATACTGTAGCTGTCTTTCAGACACATCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCACGACCTCTGGAAGAGCAGTCAGCGCTCTTAACCGCTGAACCATCTCTCCAGCCCACAAAAATGTCTTTCACAGTAGCAACATAAATGAGACATGGATGGAGACAAGCAAACATTAAGCTAGCTTTCATGAGAGACCATTTTTCACATGACTTTTTTCTATGTAATCAATGATTTAGTTGAAATTTTCAGTGGGGTTTAGTTGGAAACTAACAGTATTGCCCCAAGATTGGTCTAAATGCAGATCAATAGAGCAAAGTAAATTGCAGAGAAATTGCTTTGTATTTTCAGTGGTCTCAGAGTGGATGACACCTGATACCCTCACTGGGTAGTCACTCAGCACATTGAGAAAAAAAGTGTTCAAATTCTGGATAGATTAACTATTATAAATAGGAATGTGTGGTGATTTGTTTTTGTTAAAATAATCATCCTTAAATCTATATAAGTGGCTCCACCATTTTATGATTCATTCAGTTATTCCAGTTTACATACCAGGGTCAGAGAAATATGTGTGCATACACCTAAATCTGTATGAAAATAAACATCACTCATACATATGCATTCCTTTCATATGTTTTCAAGTTTATGAGATTATCAAAAATCAGGAAAATGCTTGGGAACTTCTGATTTGATTTTATATAGGAAAGACATCTAAGCATAGAGTACATAAAACATAAAAGAAATTAGACTTTTCCATAGATTGATTGTTAGGAACTTTACTGAATATTAGGGACGCTTAACTTGATCCAGACACAGGCAGAGCTTCACTCAGACAACAACAGTTGTCTGGGATAGAGACAGCCAGAAGCAGCTGGTAGGCGCTCAGGGTTCAGGTTCCTTTTTATTTGTGGCTCCAACAGTTTTGCCTTAGCCCTCTCCAAGTTGTAACAGAATAGCCAGGGCTCAGGGACTTATCTGTTTGGGTAGTCAAGTCTCTGACATGTTCTACCTGAGTATTCCTTTATTTGGGTTGCATCATTTTATGAGTGGTTAATAAGCGGCTTTGTTTTCAG
Seq C2 exon
TAAGCAGGATAAAGCTCCTCCATCAGAAGACGACACTGGGCGTGATGCAAGTGTATGTGAAGCTGCAGCAGCAGCAAACCGTGAAAGAAATGTGACCGCTTCAGACACAGAAGACGTACGCACCTCTAATGACGTCTTGAGTCGTGGTCCAGAGGTTGGAACAGATAATATGGAAAAGGAAGAGCAAGCACATCACACCTGTCAGGAAATGGAGCTGAAGAGGGACCAAAGTTCAGAAAGCACAGATGATCAGAGTAAAGAGCACAGTCCCACTGAAGCTGAGTTGTCTTCAGAGATTAGTCAGGATTTACAGCTAACACCGGAAGGTGTTGGCCTTGGTCAGTGTCTGAGGCAGGGGGAGGAACCTGAATCTGTGAATTCTGATGCTAGTGAGCAAGACAGCGTTCGTTTGGAACCTTTGACGCCATCAGAAGTCCTGGAGTTTGAAGCCACAGAGGTCTGCCATAGTGGTGAAGACCCTTCAGCCAGCACCAGTGACGCAGTATCTGGTGGGACAGGTGGCAGTCCTGGAGGAAGTAGCCCTCGTAGAGCAGAGTCAGCAGCAGACCTGGCAGGCGGACAGGAAGGAAGCTGAACGACAAGGCATTCCATGTTTCATTCCCAACAGAAAGCACTTAGAACTGTCCGGTGAGCTCAGGAGTGCTGTGCTAGAGGTCAGCAGTGGGAGGTCGAGAGAGGTCCGTCATACACTTCATCTGTACGTTCAATCTTATTAAATCAGTTTACCAGTAACAGCATGGTTAGTATGGATTTCCACGTTTTTAAAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631:ENSRNOT00000089335:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAAGAGAACCAGGAGCA
R:
CCGGTGTTAGCTGTAAATCCTGA
Band lengths:
358-1948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]