MmuINT0178911 @ mm10
Intron Retention
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72360286-72362891:+
Coord C1 exon
chr9:72360286-72360341
Coord A exon
chr9:72360342-72361933
Coord C2 exon
chr9:72361934-72362891
Length
1592 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TAAGCAGCTTTATTTTTCAGTAA
3' ss Score
3.65
Exon sequences
Seq C1 exon
GAAACAGCAAGACATAGTAGAGCTGAAGGAGAGCCAGGAGCATCACATTCTGGAAG
Seq A exon
GTGAGGCTAAAGGAAAACTGAGTCTTGATCAAGTTTATTGAAACAAATTAGTACTTGAACTAAATTATATTTTACTGACAGCTGGCAAAGAGTTATGTGAGCTCATTACTTTTGTAATGACTTTTAATGAAAGTTCAAACTTTTATAAATTTAAGTTTCTTAAAGTATTGTACATAAAATAGTAGCATTTTGAATACTATACTAAATATTTTAAAATATTTCCTCTATTAGATGAAAAAAGTTATAAGATACTACAGATTATGAGATTCAACAGTTAAATTATGTAATTTCTCATTTCTATCTTTATATTTTATAGTAGGCTATTTACTAATCTGTTGAGAATAACATCCTACCCCACAAAAAAAGTAAAATATTGAGGCCTTATCAAGGTGTTTTTTGTTTTCACTAGTAAAATAACTGGCCTCCTTACATCTTTATCCTAGAGTTCTTAGCAAAGAAAGAAGTTAAACAAAATTAATTTTACAAATTTGAAAGGAAGAAAAATGTGGGTTTTATCTTTGACTAGTAAACATAAGAAAATGAGCTCAGAACAAATAATTGATGAGTTATAATTAAGATGGTTGGATGTAATAGTCAGGATCTTTCTGAGAGACTAATAACATGATTGCCTGGTACATGGACAAAAATGTCTTTTACAGTAGCAACATAAATGAGACATGGATGGAAACAAGCAAATGTTAACTAAACTAGCTTTCATGAAAGACCATTTTTCATATACTTTTTCCATGTAATCAATGATTTAGTTTAGTTGAAAATCTCAATGGGGTGTAGTTGAAAACTAACAGTATTTCCCCAAGGGTGGTCTAAATGCAGATCAATACAGCAAAGTAAATTGCAGAGAAAATGCTTTGTATGTTTAGTGTTCTCATAGTAGATAGCACCCGATATCCTCACTGGGGTAGCCACTCAACACGTTGAAAAAAAAGTGTTCAAATTAGGAATATATGGTAATTTGTTTTTGTTAAAGTAATCATCCTTAGGTCTACATAAGTGGCTCTACTATTTTATGATTCATTTAATTATTTCAGTTTACATACCAGGGTCAGAGAAATATGTGTACATACACCTAAATATGTATGTACATAAACATGTACTCACACATATATACATTCCTTGCATATGTTTTCAAGTATATGAGGTTATCCAAAATCAGGAAAATGTTTGCAAATGCTGATTTGATTTTATATAGGAAAGATAATCTAAGCATAGAGTATATAAAACATAAAAGAAATTAGACTTTTCCATAGATTGATTATGTTAGGTACTTTTACTGAATATTAAGGACACTTAATTTGATCCAGACACTGTCAGAGCTTGATCAGACAATAGCAGTCACTCCTAGGACAAAGACAGCTGGAAGACACTCAGTTTTCAGGTTCCTTTTTATTTGTGGCTCCAGCATTTCTTACGAGTTTTGCCTTAGCCTTCTCCCAACTTCTAAGAGAATAGCTAGGGCTTAGGGACCTATCTGTTTGGGTAGTAAAGTCTCTTTAACATGTTTTACATCTGAGTATGCCTTTATTGGGGTTACATGGTTTTATGAACGGCTAATAAGCAGCTTTATTTTTCAG
Seq C2 exon
TAAGCAGGATAAAGTTCCTTCATCAGAAGAAGGCACTGGGTGTGATGCAAGTGTATGTGAAGCTGCAGCAGCAACACACTGTGAAAAAGATGTAACGGTTTCAGATACAGAAAATGTAAGCAGCTCAAAGAACATCTTGAGTCATGATCCAGATGTTGGAACAGATACTATGGAAAAGGAAGAAAAAACACATCATGCTTGTCAGGAAATGGAGCTGAAGGTGGACCAGAGTTCAGAAAGCACAAATCCCACTGAAGCTGAACTGTCTTCAGAGACTCGTCAAGGTTTGCAGTTAACATCAGGGGATGTTGGCATTGATCAATTTCTGAGGCAAGGAGATGAACCTAAATCTGTGAATTCTGATGCTAGTGACCCAGGCAGTGTTCGTTTGGAACCTTTGACGCCATCAGAAGTACTTGAGTATGAAGCCACAGAGATCCTCCACGACGGTGATGATCCTTCAGCTAACACCAGTGACACGGTATCTGATCAAACAGGTGGCAGTCCTGGAGGAAGTAACCCTTGTAGAGCAGAGACAGCAGTAGACCTGGCAGATGGAGAGGAAAGAAGCTGAAGTGACATAGTCATTTCAAGTTTCATTCCCAACAGCACTTAGAACAATAGTGTCTGGTGAGCTCAGGAGTGCCGTGGTAAAGGGCAGCCGAGGGAGATCTGAGGAGGTCTGTCATACACTTCACCTGTGTGTTCAATCTTATTAAATCAGTTTACCAGTAATAGCATGGTTAGTATGAATTTCCACATTTAAAAAAACCTGAATAGAACTTTAGTGAAAACTAAGTTTGTCATCCAAAGGTCTCTTAGCACTTTTTGATAAAATCTTGTTTACCAATATGAAATTATTATAATACTAATTGCTATGTTCATCAGACTTTTCCAACTTTCATTAGTACTAAAAGTCCTCATCACCTGAATATTTCTTTTAGTAAACTTAAAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535:ENSMUST00000184036:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.912
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGAGCATCACATTCTGG
R:
TGATCAATGCCAACATCCCCTG
Band lengths:
345-1937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types