BtaINT0165195 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001486 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr10:53837502-53840711:+
Coord C1 exon
chr10:53837502-53837557
Coord A exon
chr10:53837558-53840086
Coord C2 exon
chr10:53840087-53840711
Length
2529 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
AAGTAGCTTTATTTTTTCAGTAA
3' ss Score
2.22
Exon sequences
Seq C1 exon
GAAATTGCAAGATCTAATTTGGCTGAAGGAGAAACAGAAACATCAAATTCAGAAAG
Seq A exon
GTAAATATAAGGAAAAGCTGAATCTCTTGAAATTTGTGTATATAAAATGATATTTGAGCTGTATATTATTTCAGTTATTTGGGAAAGGGCTATTTAAATTTTATATATGGTGTTCCTTTTAGTAATGACTTTCAATTAAAATCAAATTTTGAAATTTTAATACAACAGAAATGTACTACAGATCCTTAGTTTTGAAGCCTTTTAAATATGTAGAATACATTTTATAAGTTGTTAATTTTTTAGAGTACAAGTAAATAAAATGGTAATGGATTGTAATTGCCTCTGTTAAATGAAAATAGTTACAAGATGCTGCAGGTTATAAGATGGTGACAATTATTGCAAATAGTTTTAAAATCTTATTTTTAAAGTATTTTTTAAAAGCTATAAGTTACTTGTGTGGTAGGATCTCAACATAAAAGTTTCAAAATTCAACGTGTTTTTTTTTTTTAATTTAATTCTTGAGTAGAACACTTAGAACACGAGATTTCACTATTTTTTAGCAAAAGAGAATCCAATATTCTAATTAGAACTTTATTCCAGTTAAAGATGATTTTGTCTTTTAATTACTTTCCCCATTTCTGTCTTTATGCTGTGTGTTTTACCATAGTCTGCTTGTTAACTTGATGAGATTAATCAATCTATTGCCTCTAAAAAGAAAATTATGGAATAAGACCTTTTGACGATGTTTCTTAGACTTGACCAGGACAATTATCTAGCCCTTTCTTTATCTAGTATTTTTCCTAGAATTTTAGATGAAAAAAGTTAACAAAATTCAACTAAGGACTTAGGAGAAAGACTAGACACATCTATATTATTTAACATTTTCTGTAAATTATAATTAGTTCAATAAGATCTGAACAAAAATAAGAATTTTACAAATTTAAATGAGGGAACTATTATAACTTTTTGAGATAATGTAATTGACCTGTAAGACCCAAGAAAATGAGCAAAGTATGACTGAAATTAACCAAAGTATTAATTAAGGCAGCAGAACCATTCTTATATACCCATAACATGTCATTACAAAATCTAATGCATAACATAGTTAATTCACAATAATAACAATGAGAAATGTGCAATTTAGAAGATTTTAAAGAAAAAATTTACTGAGATACAAAATAATTTATTAGTAACTTACGTGATAGGTCATTTTTTCCAAATTATGGTTAATGAGCACTTAATTGAAAATCCAAATTGGATTTGATTTGGAAATTAGTGGTGTTTCAAGTAGGATTCATATTTTTCTATTTATTAATACCACAATTTAAAAAATCATAGCTGTGTTAGATATTAGATTGTTTCTGTATTCACTATTTTAAACACTGTTTTAATGAGCATCCGTGTACAAATATCTTTTACTTCTTCAAACTACTAATTTAGGGAGAAGAACAGTAGAATGTAGGTGATTTAACCTATTAGATAATGAAGTACAATGTTAATTTCTAATTGTTAAAACTGGATGGTATTGGCTTGTAATAGTCTAAAGACACATCAGAACAAATTAAATAGCAGAGAAACAGCCTTACAAATATAATTTAGTAAATAATAAATGACTATTTGATAACATTGCTTTGATATATGGGTACTTCATTACAAAAAAGTCTAAATTCCAGGTGGATTAATGTAAGAAATAAGATAAATGTAATCATTAAAATTCTTTTTGGTAAAATAAGCATTGTTACATCTATATAAGTGACCTGAGATCATCTTGGAAATCTGTTTCTAAGGCTTGCAGACATTGAAAACAAACTATGGTTACCAAAAGGGAAAGAGGGTGGAGGAAGGATAAATTAGGAGTTTGGGATTAACATATATATGTGTTATTATATATAAAATAGATAAACAGCAGGGTTCTACTATATAGCATAGGAAATTATATTCACTGAATAGTTTCTGTTAATACATCAGAGTTTCTGTTAACACATCAGCGTAACACATCTTACTTACGTATGTCTGTATACATACACAGACACGTATACACGTAAACTTACAGGTATTCAAGTTTTATGCTTACATATTTCTTAGACATGTGTTCATGTTTTTCTAAGTTAGGCTGTTATGAAATTAGTAAAATCTTTGTGAATGCTTACTTGCTTTTGCTTAGGAAAAACATGCTAATCCTAAGAGGACATGTAAATCAAAGAAAAATAAAATAGGATTTTTCCCACATACATTCATTCCTTATTTAAAGTACTCTTATGAGCTAATAAGCACACTCACATTTTAACTAAAATCAAGCAAGAGTATGAACAGGTAAAGTAATGATAACGAGGATCAAAACTAATGAGTTAACTCCTCAGGACTCCTTTGAATATGTGACTATGGAGTTTCTCACTCTGCTGCCTAAGAAAATGGCCACTTCCTAAATTGTAACATCATGGCAAGGACTGGGGACTTTGATTTTTTTTCTTTTTTGGGTGGGCAAGTGTGCCTTTTTTTCTTTTTCAGAAAATGTCTTTACTTTGAAAGTAAGTATTCAAATACATTGTATTATGAAGAAATAGATAATAAGTAGCTTTATTTTTTCAG
Seq C2 exon
TAAACAAGATGAAGCTTCTTCAGAGGAAATAAAAAATGGATGTGATGTGCATTTATTTGAAGGCTCATCAACAACAAAAAGTGAAGAAGACATATCCGTTTCAGATAAAGAAAATGATAACTGTCTTGAAGATCAGGAAACTGGCTCAAAGAATATCTTCAGTTATGATTCAACTATTGATGCAGATAAAGTGGAAAAGGAAAAACAAGTAGAGCACATATGTCAGGAAACAGAGTTGAAGATGTGCCAAAGTTCAGAAAACCTCATTGCATGTGATCAGATTGAGGATCGCAATGCTGGTGAAGCTAGATTTTCTTCCAAGAATATTAAAGATTTGCGGTTAACATCTGGTGATGTTAGTATTGATCAGTTTTTGAGAAAAAGAGATGAACGTGAATCTGTTAGTTCTGATGTTAGTGAGCAAGGCAGTGTTCATTTGGAACCTTTGACTCCATCAGAAGTGCTTGAGTTTGAAGCCACAGAGATTCTTCAGAAGGGTAGTGGTGATCCTTCAGCCAAGACTGATGCTGTAGTGTCTGATCAAACAGATAACGTTCCTGGAGAAAATAGTCTTAGCACAACAGAGACAACAGGAGACCTGGTAGATGAAAAAGAAAGAAGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001486:ENSBTAT00000001949:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.702
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development