GgaINT1002453 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L0Z3]
Coordinates
chr2:350396-351503:+
Coord C1 exon
chr2:350396-350529
Coord A exon
chr2:350530-351345
Coord C2 exon
chr2:351346-351503
Length
816 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CAGGGGGGTCCCGGTGCCAGCCA
3' ss Score
-0.32
Exon sequences
Seq C1 exon
ATGCTCCGCTCCGCTCCGCCCCGTCCCGTCCCGTCCCGTCCCGCCCCCACGGTCACCTTCCGGGCCCACCCCGGCTGTGGTTCCGCCGTCATCGCACCGGTGCCCCCCCCCCAGCGCCGGCAGCAATGCAAAGG
Seq A exon
GTGAGGCCTCAAACACGCGCTACCATCCCGGTACCCGCACCCGATCCCAATACGCTCACCGCATCCCGATACCTACACCCCCATCCCGGCCCCCACAGCCCATCCCAATACCCACACCCCACGCCAGTACCCGTAGCCCATCCCAGTACCCCCACCGATCGCAGTACCCACGCCCTCCCCTTCCCCCCTCCCCCCTCCCATCCTGATACCTGCACACCATCCCACTACCTGCACCCCATCCCGATACCCACACCCCTTCGTGGTACTCTCGCCCCATCCCAATGCCCACCCTCCACTCCAGTAACCCCACCCCAATACCCCCACCCCATCCTGGCACCCACACCCATCCCAATACCCACACCCCATCCTGTTACCCTCACCCCTGTTCCGGTACCCCATCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACACCCCATCCCGGTACCCCCACCCCACCCTGGTATCCCCATCCCATCCCAGTACCCCCACCCCATCCCAACACCCCCACCCCATCCCGGCACCCACAGCTCCTCACACCCCAGGCCTGGGGAGGGCTCTGGTCACAGGGGGGTCCCGGTGCCAG
Seq C2 exon
CCATGCCCTCAGCCCCCCCACTCCCCCAAAGGTGGTGGTGGCATTTGAGGACGTGGCTGTGTATTTCTCTGCCGAGGAGTGGCTGCTGCTGGCGCGGTGGCAGCGGGAGCTGTACCAGGAGGTGATGATGGATAACTACGACCTGGTGGCGTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018597:ENSGALT00000029406:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCACGGTCACCTTCC
R:
GACACGCCACCAGGTCGTAG
Band lengths:
246-1062
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]