HsaINT0188525 @ hg19
Intron Retention
Gene
ENSG00000152475 | ZNF837
Description
zinc finger protein 837 [Source:HGNC Symbol;Acc:25164]
Coordinates
chr19:58878990-58881295:-
Coord C1 exon
chr19:58881084-58881295
Coord A exon
chr19:58880729-58881083
Coord C2 exon
chr19:58878990-58880728
Length
355 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
TTTCTTCTCTGCTCTTCCAGATC
3' ss Score
12.25
Exon sequences
Seq C1 exon
ATGAGGCTGCCAGCCTTGAGAGCACCACCGTTACCTGGTTGAAGAGGGGAGGGGAAGTCCAGCATTGGCCTCTGCAGCGTGGATCTCCCGGCCAGGCTCTCAGCTGTCAGGTGAGTCTCACCTCACACCTCTCAGAAGACATGGACAATGGCAGTGAATGGAGCCAGGAGGACCCGGAGTGTCGGCTTGCCACTGAGAAACGGAGGGCAGGA
Seq A exon
GTAAGTGAGATTTTGGGGAGCTGGCAGCTGAGCAACGGGGGAGTCCCTGTTGCTTGGGGAAGGGGGACCAGGGAGGGCCTTAGCCAGGGGCACAGTGTTTTAGGAGCTAGTGTTGGGGAGGAACGGTGATGGCGGGCAGGCAGAGCCTGGGAAGCTGTTCTCTGGGGTCTGGGTGGTGACAATTTGAAGAGGGGCAGGACGGGCTGCCTATGTCACTCCATTTACCCTTTCGCATCTGCAGAGAGCTGGGGGCCGCCCAGTAGGTGCCAGCTGTGGGGTGGTCGCTCGTTGGCCCAGTTCTCCACTTCTCTCCTCCTGGGAACCGCCAACCTCCATTTCTTCTCTGCTCTTCCAG
Seq C2 exon
ATCCTACAACCAGAACTCTGCGCCCCAGGATGGAGGCTCCAGCCCAGAAGGCTGGGCAGGGAGGACTCCCCAAGGCCGATGCCCAGGGTGCCTCCGGGGCCCGGGAGAAGAGGCCCGAGGAGCCGAGGCCCCTCGAAGAGGACCGAGCTGGGAGCCGCCCCACTCAAAAGGGGGACCTGCGTGGAGCGGCGGGCGGTAGGACGACTCCCCCAGGCGGGGGCTCCCGGGGCTGCAGCCTCGGGGTGAGCCCCGGCCCGGGGACCCGGCACAGCGCCGGGACCAGACCCCTCGTGCGGGAGCCGTGCGGCCCCACCTCTTCTCAGAACCCTGAGCTGGTTATCCCCGAGGGGCTGCAAGCCCGGGAGGGCCCCTGTAGGAGCCCAGCGCGTGGCGGGGACTGCAGCAGGAACTCCTGCCTGGCGTGGCATCGCGGGGCGCCCGCTGGGGAGACGCCACCCGTGTGTGACCCCTGTCCGGAGCGGATCCAGAACCACCCCCGGACTCAACTGTGTGAGGTCCACACGGACTGTTGGCCGTGCCAACCAGGGACTGGCGCTCCGACCTGCCCGAGGACCCCAAAGCCGACCTCCCGCGGGAGGAACCCCTTGGTGGAGCAGCCCCGGGCTTGCGCGTGCGGCGAGGCCTTTGCGTGGAGGGCCCTGCGGATCCCCCAGGAGAGGCTGCAGGCGACGGAGGAGCCCCGTCCGTGTGCCCGGTGCGGGAAGCGCTTCCGCCCCAACCAGCAGCAGCAGGCGGGCAAGAGTCCCCCAGTGTGTCCTGAGTGCGGCCAAACCTCGCGACCTCGCCCTATTGTCCCCGACCCCCCGGCCCAGCGACTGTACGCTTGCGACGAGTGCGGCAAGGCCTTCACGCGCACCTCCAGCCTGCTGCAGCACCAGCGCATCCACACGGGCGAGCGGCCCTACGAGTGCGCCGAGTGCGGCAAGGCCTTCGTGCGCTGCTCCGGCCTGTACCGCCACCAGAAGACGCACTCGGCCGAGCGCCACCGGCGTGGCCCCGTCCTGGCGCGGCGCGCCTTCCGGCTGGGGTGCCCGCCCTGCGGGGACTACAGCGAGCGGAGTCCCCGACGGGGGTCGGGAGCCGGGGAGAAGCCGTACGAGTGCGCCGACTGCGCCAAGGCCTTCGGGCTGTTCTCGCACCTCGTGGAGCACCGGCGCGTGCACACCGGCGAGAAGCCCTACGCGTGCCCCGAGTGCGGCAAGGCCTTCAACCAGCGCTCGAACCTGAGCCGGCACCAGCGCACTCACAGCAGCGCCAAGCCCTACGCGTGCCCACTGTGCGAAAAGGCCTTCAAGGGCCGCTCGGGCCTGGTGCAACACCAGCGCGCGCACACCGGCGAGCGGCCCTATGGCTGCTCCGAGTGCGGAAAGACCTTCCGCGGCTGCTCCGAGCTGCGCCAGCACGAGCGCCTGCACTCGGGCGAGAAGCCCTACATCTGCCGCGACTGCGGCAAGGCCTTCGTGCGCAACTGCAGCCTGGTGCGCCACCTGCGCACGCACACGGGCGAGCGGCCCTACGCGTGCGGAGATTGCGGCCGCGCCTTCAGCCAACGCTCCAACCTCAACGAGCACCGGAAGCGGCACGGGGGCCGCGCCGCGCCTTGACTGCAGGGAGCCGAGAGTCGACGCGTCGCCCAAGCGAACCCTGCGTCGAGGAGGGGCCTTTGTCCCGGAAAACCCACCAACGTTTGTAACTTTGATTAAACTTCACTTTGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152475-ZNF837:NM_001129730:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCACTGAGAAACGGAGG
R:
AGGGTTCTGAGAAGAGGTGGG
Band lengths:
356-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)