HsaINT0188525 @ hg38
Intron Retention
Gene
ENSG00000152475 | ZNF837
Description
zinc finger protein 837 [Source:HGNC Symbol;Acc:HGNC:25164]
Coordinates
chr19:58367618-58369928:-
Coord C1 exon
chr19:58369717-58369928
Coord A exon
chr19:58369362-58369716
Coord C2 exon
chr19:58367618-58369361
Length
355 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
TTTCTTCTCTGCTCTTCCAGATC
3' ss Score
12.25
Exon sequences
Seq C1 exon
ATGAGGCTGCCAGCCTTGAGAGCACCACCGTTACCTGGTTGAAGAGGGGAGGGGAAGTCCAGCATTGGCCTCTGCAGCGTGGATCTCCCGGCCAGGCTCTCAGCTGTCAGGTGAGTCTCACCTCACACCTCTCAGAAGACATGGACAATGGCAGTGAATGGAGCCAGGAGGACCCGGAGTGTCGGCTTGCCACTGAGAAACGGAGGGCAGGA
Seq A exon
GTAAGTGAGATTTTGGGGAGCTGGCAGCTGAGCAACGGGGGAGTCCCTGTTGCTTGGGGAAGGGGGACCAGGGAGGGCCTTAGCCAGGGGCACAGTGTTTTAGGAGCTAGTGTTGGGGAGGAACGGTGATGGCGGGCAGGCAGAGCCTGGGAAGCTGTTCTCTGGGGTCTGGGTGGTGACAATTTGAAGAGGGGCAGGACGGGCTGCCTATGTCACTCCATTTACCCTTTCGCATCTGCAGAGAGCTGGGGGCCGCCCAGTAGGTGCCAGCTGTGGGGTGGTCGCTCGTTGGCCCAGTTCTCCACTTCTCTCCTCCTGGGAACCGCCAACCTCCATTTCTTCTCTGCTCTTCCAG
Seq C2 exon
ATCCTACAACCAGAACTCTGCGCCCCAGGATGGAGGCTCCAGCCCAGAAGGCTGGGCAGGGAGGACTCCCCAAGGCCGATGCCCAGGGTGCCTCCGGGGCCCGGGAGAAGAGGCCCGAGGAGCCGAGGCCCCTCGAAGAGGACCGAGCTGGGAGCCGCCCCACTCAAAAGGGGGACCTGCGTGGAGCGGCGGGCGGTAGGACGACTCCCCCAGGCGGGGGCTCCCGGGGCTGCAGCCTCGGGGTGAGCCCCGGCCCGGGGACCCGGCACAGCGCCGGGACCAGACCCCTCGTGCGGGAGCCGTGCGGCCCCACCTCTTCTCAGAACCCTGAGCTGGTTATCCCCGAGGGGCTGCAAGCCCGGGAGGGCCCCTGTAGGAGCCCAGCGCGTGGCGGGGACTGCAGCAGGAACTCCTGCCTGGCGTGGCATCGCGGGGCGCCCGCTGGGGAGACGCCACCCGTGTGTGACCCCTGTCCGGAGCGGATCCAGAACCACCCCCGGACTCAACTGTGTGAGGTCCACACGGACTGTTGGCCGTGCCAACCAGGGACTGGCGCTCCGACCTGCCCGAGGACCCCAAAGCCGACCTCCCGCGGGAGGAACCCCTTGGTGGAGCAGCCCCGGGCTTGCGCGTGCGGCGAGGCCTTTGCGTGGAGGGCCCTGCGGATCCCCCAGGAGAGGCTGCAGGCGACGGAGGAGCCCCGTCCGTGTGCCCGGTGCGGGAAGCGCTTCCGCCCCAACCAGCAGCAGCAGGCGGGCAAGAGTCCCCCAGTGTGTCCTGAGTGCGGCCAAACCTCGCGACCTCGCCCTATTGTCCCCGACCCCCCGGCCCAGCGACTGTACGCTTGCGACGAGTGCGGCAAGGCCTTCACGCGCACCTCCAGCCTGCTGCAGCACCAGCGCATCCACACGGGCGAGCGGCCCTACGAGTGCGCCGAGTGCGGCAAGGCCTTCGTGCGCTGCTCCGGCCTGTACCGCCACCAGAAGACGCACTCGGCCGAGCGCCACCGGCGTGGCCCCGTCCTGGCGCGGCGCGCCTTCCGGCTGGGGTGCCCGCCCTGCGGGGACTACAGCGAGCGGAGTCCCCGACGGGGGTCGGGAGCCGGGGAGAAGCCGTACGAGTGCGCCGACTGCGCCAAGGCCTTCGGGCTGTTCTCGCACCTCGTGGAGCACCGGCGCGTGCACACCGGCGAGAAGCCCTACGCGTGCCCCGAGTGCGGCAAGGCCTTCAACCAGCGCTCGAACCTGAGCCGGCACCAGCGCACTCACAGCAGCGCCAAGCCCTACGCGTGCCCACTGTGCGAAAAGGCCTTCAAGGGCCGCTCGGGCCTGGTGCAACACCAGCGCGCGCACACCGGCGAGCGGCCCTATGGCTGCTCCGAGTGCGGAAAGACCTTCCGCGGCTGCTCCGAGCTGCGCCAGCACGAGCGCCTGCACTCGGGCGAGAAGCCCTACATCTGCCGCGACTGCGGCAAGGCCTTCGTGCGCAACTGCAGCCTGGTGCGCCACCTGCGCACGCACACGGGCGAGCGGCCCTACGCGTGCGGAGATTGCGGCCGCGCCTTCAGCCAACGCTCCAACCTCAACGAGCACCGGAAGCGGCACGGGGGCCGCGCCGCGCCTTGACTGCAGGGAGCCGAGAGTCGACGCGTCGCCCAAGCGAACCCTGCGTCGAGGAGGGGCCTTTGTCCCGGAAAACCCACCAACGTTTGTAACTTTGATTAAACTTCACTTTGTACACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152475:ENST00000427624:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCACTGAGAAACGGAGG
R:
AGGGTTCTGAGAAGAGGTGGG
Band lengths:
356-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains