GgaINT1002648 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20775307-20776267:+
Coord C1 exon
chr8:20775307-20775434
Coord A exon
chr8:20775435-20776142
Coord C2 exon
chr8:20776143-20776267
Length
708 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGG
5' ss Score
6.35
3' ss Seq
TTTTCTCCTTTGCCCACTAGGAT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GGAATGGCTTGCTGATCCTGCATGGGCCCAAATGGCACCAACATCGGAAGCTCCTGACACCAGGCTTTCATTACGACGTCTTGAAGCCTTATGTAGCCCTCATGGCAGAGTCTACCAATGTGATGCTG
Seq A exon
GTAGGGACAGTGTCTGTACCTCTCTCTGTCCTATGTTATCACCCATGATTCTGATTGTAACCATGAGATAAGAGTCTTCCTGCAGTGTCCTGGCTGCTAGTACTTGCAAAGATGAGCTGTGACTTGGGCAAGGAGCTGGAGGCCCACTGTGTCAGCCATTCCACTAGGTGGCAATCTGTACCAAAGACAAAATTCTATCCACATAAGCACTGTTCCCCAGCTTGATTTCATGCTCTAAGAGCTCAGGTGCATCCATGCTCCTGTCTCTCTTCCCTTTCTTAGCTTTTGGGTCACCGGTTCCTTATGGCCCCAGAAGGAAAGAAGATCCAAAGTAATTTTGCAGTATTTATGGTTTCTCTTAGGATACCCTATGGGAAACATTGAGCAAGAGTTCCTATATTTTATGCTGAAAAAACACAGTGGGACAGAAATCATGAGATGCGGGAAAAGCCTTGATTGGGAGCTTGCATCCTAGGCACTACAGTCATATATTCTGGAGAGATAAAGAAAAAAGAGACTGGGGGAAGCCTGGTGCCAGCACACATTGCTCTGGCTGCTGGTTCCCTTCTCCGGAGTTTTGACAGCAACTAAGAGATCCTCTTCACTTCTCCATTCCTTCAGGACACATCCCATACTAAGCACTTCCTTAATGGGAGGGTGAGTGCAGAACTGTCTTTTGCATTCTCTTTTTTCTCCTTTGCCCACTAG
Seq C2 exon
GATAAGTGGGAAAAGCTGATCACAAATGGGAAATCGGTGGAGCTCTTTGAGCACGTCAGCTTGATGACTCTCGACAGCATCATGAAATGTGCCTTCAGCTACCACAGCAACTGCCAGACCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688:ENSGALT00000017050:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
NA
C2:
PF0006717=p450=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGCTTGCTGATCCTGCA
R:
GTCTGGCAGTTGCTGTGGTAG
Band lengths:
246-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]