GgaINT1002709 @ galGal4
Intron Retention
Description
NA
Coordinates
chr10:12534846-12536860:+
Coord C1 exon
chr10:12534846-12535547
Coord A exon
chr10:12535548-12536708
Coord C2 exon
chr10:12536709-12536860
Length
1161 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
GATCCTGTGATTTTGTGAAGGCC
3' ss Score
3.82
Exon sequences
Seq C1 exon
CGGATGCTTTATTTTCACACACGGTGTTTTCTTTCCGGTTTCTTTCCCAGCCGGGCAGGGTGCAGGGAGCAGGGCCCCACTCCTCATTTCCTCACCATAAAACAACAAAGCGGAGCGGGGTCAGCGCACACGCGTGGCCACAAGGCCTGGCAGCGCCCAGCCCGGGGGTGGCTCTGGAGTTCCGTAGGTGATGCCCTGGCGGAGGGGTGCAGCTGGGCAGCCTAAAGGTTTTGGCACACACCCCCTGAGCCCACCGTCCTGGAGCTGCACTCGTGGCACTCCTGCAACGTGCTCACACGGCACTGCCATTGCCAGAAGTTGGTTCCCGTGGTGGAACGCGAGGCACCCTGTGGCGGTGCGTGGGGCTGTGAGCAGAGCATCGCGGGGCTCACCCCTTGATTTCAGCATCCCCAGTGGAGCACACCTTTCCCCTCATCTTCTCCCTCGCACTGGGCAGTGCTGGTAGAGCAGCACGTCGTGTGGAGGTATGCAGTGTGGGCACACGGCTCTGGCTGGGGGTGACAGGCGGGCAGGGGGCTCGGGGCACCCCCCCCTACTCCATCCTGAGAGCAGGGGGTTGGGAATAGCGTGTGTTTCCCTTTAAGAGGCAGGCCCTGGAGCCGCTTCCTCTCAACCCTGCAAGAGCCCTAAACACACTGCATCTGCCTGCAGCCTGCCCGTTGCCTGCTGTTGCTGCCCGCC
Seq A exon
GTGAGTGGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATTCCGGGTTTTTTAAAAACCCGGAATTCAAACCCTTTCGGTTCCAACCACGTGGCGGTGTGCGCGCGTGTAGCGCAGGGGTGGCACCGGGTGACCGGGGACCGTCCCGTGCCGTGCTGGGAGCAGCCGGCTGCGCTCCCCTGCCCTGGTGGCGTGGCCGGAGGTCACCTCTGTCCCCGGCTCCGTCCCCGCCGCGGACTCCAGCACCCTCTTGCAGCACTCCTAAACCACATCTCTACGTGGGGTGCGGATGTCAAACCCCTCCTTGCAGGGGCTGCGGGAGGCTCCGTGGGTGCCGGCCCCCCTCTGCCGGCTCCGGGGAAGTCTGCAAGCCCCGCTGCCCGCACTGAGTGCCACCCTTGGGTGCCAGCAGGAGAAGGGCTGCGGGGACACGGGGCACCGGGACTCTCCTATGGGATGCGGTTGGTGTGTTGCATGGCGACACCGCCCTGCTTGTGTCCTTGTGTGCCAGGGAACCCTGGCCGTTTTGGGGTCGCCCTACAGCATGAAGAGTGGCTGGTAGGGCTGTCTTGAAGCAATTGTGGGTGGTTAACCGGCTGCTGAGGGAGCGCTGGTACATTTCTAGACATTGGTAGGATGAGGGGTAACGGCCTCAAGCTGCACTGGGGGAGGTTCAGGTCGGATATTAGGAAAAATGTATTATCTGAAAGAGTGGTGCTGCGGTGGCACAGCTGCGCAGGGAGGTGGTGGAGTCACTGTCCCTGGAGGTGTTTCAGAACCGTGGGGATGTGGCACTGAGGGACGTGGTGGGGATGGGTTGATGGTTGTATTAGGTGAACTCAGTGGTCTTATCCAACCTTAATGATCCTGTGATTTTGTGAAG
Seq C2 exon
GCCCAGGGTCCAGCCTCATTCCCCAGCCATGCTGCTGCTCCCACTGCTCCTCAAGGCTACCCTTCTGCGGATGGTCAACTCCTACCACCCCTTCTACAATGGCTTCTATTACAACCACGTCATGAACGACGATGACAACGGGAACGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021135:ENSGALT00000034015:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATCTTCTCCCTCGCACT
R:
GAGTTGACCATCCGCAGAAGG
Band lengths:
353-1514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]