GgaINT1002798 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NE56]
Coordinates
chr19:306421-307451:-
Coord C1 exon
chr19:307280-307451
Coord A exon
chr19:306513-307279
Coord C2 exon
chr19:306421-306512
Length
767 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CTGCTCTCTCTGGGTTCCAGCTG
3' ss Score
8.04
Exon sequences
Seq C1 exon
GCCTGGCTCTCTGAAGAGAGGCCTTGCTTCGCAGTGCCCCGATGACTGCTCAAACAAGAGGTCACGCACCTCCTCCATGAGCTCCCTCAACAATACGTACACAAGTGGAATCCCCAGCTCCCTGCGCAATGCCATCGCCAGCTCCTACAGCTCCAGCCGGGGCCTCACGCAG
Seq A exon
GTAGGAAGCACTCCTGAGGGCACCACTGCAGCCGTGCACAGCACACAGCAGCTCGACCCTTTGGGACCACCACGTGACTCAAACCCCACAGCAGCTGTGGGGCGAGAAGGTGTCACTGGAGTGACAAGATCCAGGGAAAAGGAAGGAGATAAAAATAATCCCTTTTATGCGCTGCCACCTTTCCAGCTGGAGTCAGCATGGATCACAGCCATGTGTTCCCGCTCTGAACCACGTCCCCTTGGCAGCTGCAGAGCTGTAGTAAAACAGTGCTTGAATGGACAGGCCTGCGGGTGTGATGGTGGGACATCATCGTGGCTAGCAGAGCTGTGCTGTCTCTGAAAAAATAGCATGGAGGAAGCCTTGGGAATGGTGGGTTTCCTCTGAGAGGAGTGAGGTTGAAATCCTTGGAGTGGGATCTGTCCTCTGGCAGGGGCAGGTGGCAGCACCTGAGGCCACCAGGCAGCTCTGCCTGCGCTGTGCGATGGCCACGGCTGTGCCTGACCAGCAGCATCCCCCCTCCTGTCCTCGTCGCTCTTGGAGCCCGGAGGCAGCTTGCTCACAAAACAGGTTCCCTTTGGTGTGGGCAAACCCTGCAGTGCTCCACAGAACGTGGAGGGGAGCTTGGTGGTGTTGGAGGGAAGGTGAGGCTGTGAGCTCATTGGACACAGTTCTGGGGGGCGACGTTCAGCATACAAGTGAGCAGGAAAGTGGGATGCTCTCCTCCCTCCCTACCTGTGCACTGAGTCACTGCTCTCTCTGGGTTCCAG
Seq C2 exon
CTGTGGAAGAGGAGTGGTGTGAGTGTGTCACCGCTGTCCAGCCCTGCATCCTCCCGTCCCCAGACACCAGAGTGGCCTATCAAGAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021694:ENSGALT00000001368:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(23.7=100)
A:
NA
C2:
PF152291=POM121=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAGAGGCCTTGCTTCG
R:
CTGGCTTTCTTGATAGGCCACT
Band lengths:
254-1021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]