BtaINT0003819 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BG57]
Coordinates
chr25:34347093-34350868:-
Coord C1 exon
chr25:34350694-34350868
Coord A exon
chr25:34347185-34350693
Coord C2 exon
chr25:34347093-34347184
Length
3509 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TACTTGTATTTGACTTTTAGCTG
3' ss Score
5.83
Exon sequences
Seq C1 exon
GCCTGGGTCTCTGAAGAGAGGTCTTAATTCACAGAACTCAGATGATCACCTGAATAAGAGATCCCGCACCTCTTCTGTGAGCTCCTTGACAAGCAGCACGTGCACAGGCGGCATCCCCAGCTCCAGCCGCAACGCCATCGCCAGTTCCTACAGCTCCACGCGTGGTCTCTCTCAG
Seq A exon
GTACATTCACCCTGTGCTGTGGGAGACATGGGTTCCCAGCACTAATTAATCGATCAGCCAGTGTTCACTCCCACCTTCTACCATCAGATAGTGGTATTACCACTAACAGATACAAACACTCGAGTGATAACTACGGCCCAGTGGAGCAGAATAGAAAGCTCCAAAAGTAGAGCAGTCATGTGTGGGAACTGGGTACAAGACAGAGCTGTTACTGCAGATAAATGGGCGAGAGGTGCATAACTCAGTGGATGATACTAATTTTATCAACAGGTAGATCAAGTAGTCCAGATTGCATTGGACCATAAAAGAAATTTATCCTCTGGGCGTTGAGAATTTGATGAAATTTTTTAAATGTTATCATTCTCTTTTTTAGAAAGAGAATGTAGGATATAGCTTAGGGAACAGAGCAAGCTTTGCTACCACACAGATATCCAGATGTGGGTTCCAGTCTTGGCTCTGACAGTAGCTCTGGGGCTTTGGGCTAATCAGTATTTCTCATTTCTGAAGGATTATTGTAAAGACTGAAGGTAGTGTTTGAAAAGTACCCATTTCAGTGCCTGTTTAATAATCTATAGTAGCCAAGTAAAAATAAAGCTTATTGTGGAGGAAGATTTTCGAGGGGAGAAAAATTTTGAGTTAAGTTAATCCAGAAGGCTCTTAGAGTGATGTAAATGAAAGATGAAGGTCTCAGTTGTAGGGATGCTAAAAGGACAATAACAGCCTTTACCTTGAGCACTTTCTCTGGGCCAGCCCCTCTACTAACCAAGCACTTTACATACACTTCCTCATGTAATCATGACAGCAGGCGTATTAAGTATACACTCATTATCCCTATTTTAAAAATCTTATGTCAGATTTCAAACGTACACAAAAAGAAAATGCCATGACAGACCTCCATGTAGCTTTACTAGTTAACAGCATTTTGTCAATCATGTTCCATCAACCTCTGCCCCCCATTTGTTTTGCTGTTAACGTTTTAAAGTAAATTGAGGACTTCCCTGGTAGTCCAGTGGTTAAGAATTTGCCTGCCAATGCAGGGGACATGGGTTCAGTCCCTGGTTTGGGAAGATTCCACATGCCGCAGGGCAACAAGTCCACACACCACAGCTAACAAGCCCTGCTCTGGAGCCCGCCAGCCACAGCTAGAGAAGTCACCACAAGGAGAAGCTTGTGCACTGCAGCAAGACGAGTCCTTCAGAGCAGCGAAGACCAGCACAGCAAAAATAAATGCACAGACATGAAGACAAGTTAAAATAAGCAAAAAACAACAAACTGCAAACATGTCATTTCAGCTATAGGTCCTTCAGTATATTTTTAGATTTTTTTTCACATTAATAAGTACAATACCATTATTCCTCTTAAACGATTTATAATAGCTATTTAATATTAGCTAATATCACTTCACATTTAAATTGCACTTACAACCATAAACTGTCTTATTGCAGTTACACTGTTTGAATCAGGGACCAAAAACCAATTGATGACATTTGGTTCATATTTCTCTTAGGCTCTTTTAATCTATACTACTACTGTTACTATTTTTTTTTTTTTCATGCTTTTGAAAAAAGTAGATGGTTTTGTTCTGTAGGATTTCCCATATTTTGGATTAAGTTTGCATCATCATGGTGTCATTTTAACTTACACTCTATCCCCTGTTTTCCGAGGCTTAATTACATATAAGTTCAGTTAATTTGGCAGAATATTGCACAGGTGGTACTGTGTACTTGGATTTTTTTCTTTTTTTTGGTACTGTGTACTTTGGGTTAGGGTTTCCCAGGTGGCTCAGTGCTAAAGAATCTGCCTGTCAATGCAGGATACCCCAGAGACATGGGTTCAATCCCTGGGTCAGGAAGATCCTGGATCAGGAGGAGGAGATGGCAACCCACTTCAGTGTTCTTGCTTGGAAAATCCCAGGAAAAGAGGAACCTGGGGGGCTACAGTCCATGGGGGTCACAAAGAGTCAGAGATGACTGACTAACCACACACACACGTATTTTGGATTGCATCTTGTCAGGAACAGATGAAGTCTGGTGGTTTCCTTTTTGATGTTAGTATCAGTCTGTGGGTATTGCCACTCTAGTCTGTTTTAGAAGGTTTAGCAGGTTGCAAAATGGGGATTTCCTTGGTTGTTCAATGGTTAGGACTCGGTGTTTTCACTGCTGGGGCCCCAGTTTGATCCCTGGTAGGGGAACTAAGATCTAGCAAGCCTTGTGGCATGGCCAAAGAAAGAACAAGAAAAACGCGCTTCTCATGCATTGCTGGTTGGGAGCATCACTTGGTACAGTTCCCTACAGGGCGGGGTGGCAGCGTTATCAACAGTAGAGATGCACATGCCCTTAGATCCGGCAGGTTTACTTTTAGGAATTAACCCTACACATACAGTCAGAGACATGCATGAGGATGTTGATTGTGCCATCGTTTTAATAGTAGAAGCTGGGAAGCAATGTAAGCATGTCTTTTTCAGGGACTGGTTGAATAACTTACCATATTTCTGTAAGTTGAAATACTATATAACTGTTAAAAAGAATAGGGCAGTTTTAATAGGTACTGCTGTAAATGGTCTCAAAGTATATTTTTTTTAAAACGCATAGTGCAGAGCTGTGTATAGTGTCCTCTATTCATCCTGCGATTTCTTTCATCTTTTGATGTGTATAGAGTAATTTTGACAGGATATATTAGAAACTGGTAATAACTGTTGAAATAGGAAGGAAATTTTTACTGTGTACTTGTTGGAATTTATTTTATTTTTTGGCCATGGTAGGTCTTCGTTGTTTGTGGGCTTTCTCTAGTTGCAGCAAGCAGGGGCTGCTCTTCATCGCTTCTCATTGCAGTGGCTTCTCTTATGTGGAGCACAGGCACTAAGGTGCATAGGCTTTGGTAACTGCAACACATGGGCTCAGTAGTTGTGGTGCACAGGCTTAGTTGCTTCACAGCATGTGGGATCTTCATGGACCAGGGATTGAACCAGTGTCCCTTGCATTGCAAGGCATATTCTTAATCACTGGACCACCAGGGAAGTCCCCAGACTACCCTTGATATCAGGGAACTCCGCTTGGTGAGGAGACAGATGTATGGATAATTATCATATAATGATAAATACCACTAATGTTACAGAAGTCATAAATGTCATGATAATGTATTTTTAAAAATAAAGTTAATGAAGTAAAACTGAAAATTTAATGAGACCAAAACTAAACTAGTTTACTAGGTTGTCTTCGTTGGAACAGTTTCTTAGTTGACTTTTATTGTTTCCATAGATAATATGGAGCAAACTTATACGTACATCTTAGCTCTAAACTGTTAAGTGATTGTGACATCCTTTTTTGTAACATAATGCCAAAAGTACATTCTTCCGTTCTACTTTTATTAGTTAGCATGCCATTAGTTCTTCATACTTTTTCTTAAGTTACTTAAAAGGAGATGTTATATGCAGTGATGAACAGAACTTTATCAAAGGTCGGATGATAAACTATCAACCAGGGTCAATCTTACTTGTATTTGACTTTTAG
Seq C2 exon
CTGTGGAAGAGGAGTGGTCCCAGTTCATCTCCATTCTCTAGCCCAGCCTCATCCCGCTCCCAGACACCAGAGAGGCCAGCAAAGAAAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017939:ENSBTAT00000023854:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(24.3=100)
A:
NA
C2:
PF152291=POM121=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]