GgaINT1004848 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GMH5]
Coordinates
chr3:44667562-44668764:+
Coord C1 exon
chr3:44667562-44667679
Coord A exon
chr3:44667680-44668689
Coord C2 exon
chr3:44668690-44668764
Length
1010 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
TATTGTATTCTCTGTTGTAGTAC
3' ss Score
7.33
Exon sequences
Seq C1 exon
CTTCTTCTGAGCATGACTGTGGAAAATTCTCAATGAGAAGCGAGCGGACTTGTGAGCAATACAGAATGTGTGACGCATCTCCGGGGTCTTGGCCTTGGCATGTCAGTCTCAGGACAAG
Seq A exon
GTATTGATATTCCAGACTGTATTACCATCCCTGAGCACCAGCATTTCACAAGGAACAGGCATTAGAAAGGGGTTGGTACAAAACAGTGTATTTGCCTCTGGAGACTAGGTTTGGTTTCTATATAAAATACCTTTACATATAAAATTAACTTTTTTCTTTTTTTTTGTTTTTTTTTTTTCTTTTGGCATAATGTCCACAGAAAGTTTCTATTGGGTAATTAGCACAAGAATTCCCACTTTCTTCTGAACATCTAGAGGGCAAACTTGAACTACAGATACACTTAGATTTACTGAAAAGGGGAAGGAATAAGTGTCACTGAGGATAATGACAGTTAATTGCATTCTGCACTGGGGGAATTAAGCCCAGAAATATTCAAATCTAAATTTCTATTGTGTTAGAAGCTATGTGAAGACTACCACCTCTCTGTACAAAAATAAATGTATGCATGGCATTTCCACAACCACGGAGTGGTATAATAGGAGATGAAGAAGGGCTTGCAGAAAGGCTAGTGAAAGTTTCTACACAACTGTTGACAATCATTATTACAGATAATATCCCAAGAAAAGTTGAAAGTCTATAGCAAGATTTATGCTCTAGTCCAAGACAGTTCTACAAATAAATAGGATATAGCCTTTCAAAAAAAAACATTGCTAGGAAAAAAAGAAGAAAAATAAAAACCCAAAAAACTCAACTGGGTTTCAGATTTTTCTTTCATAGCTCTCGTTCTGAAGCAGATAAAATTTGTCCTCTGAAAAGTTGCTTTTGATTTCTCTTGCAGTTGACATAAGACAATCCCTGAGCAGTAAAAGATTTGAATGTGGGGCATATTGCTTGTTTGCTAATTTTTCCCACTGCACACAGCACAGGTGGTAGCATATTGACTGTGCGGTCTTAGATTAATATTGTATATTAATATAATTAATAATATAAAATATTATATATTACATTGTATAATATATTAATATATAATTAATATAATATTCAAATTGTTATTGTATTCTCTGTTGTAG
Seq C2 exon
TACCAACATGCATCATTGCGCTGGCACTCTGATACATCCACAATGGGTCCTTACTGCAGCTCAGTGCTTGCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028886:ENSGALT00000044267:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(27.4=42.5)
A:
NA
C2:
PF0008921=Trypsin=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTCTGAGCATGACTGTGGA
R:
CTGAGCTGCAGTAAGGACCCA
Band lengths:
182-1192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]