GgaINT1004856 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GMH5]
Coordinates
chr3:44657893-44658751:+
Coord C1 exon
chr3:44657893-44658056
Coord A exon
chr3:44658057-44658621
Coord C2 exon
chr3:44658622-44658751
Length
565 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAT
5' ss Score
7.84
3' ss Seq
TTTGTTTTCATTGTACATAGATC
3' ss Score
7.85
Exon sequences
Seq C1 exon
CTTTACGCCTGAGAAACACCCCAGAGCAGAGTTGGAGGAAAACTACTGTAGAAATCCTGATGGGGATGTAAGAGGACCCTGGTGTTATACAACAGATCCTGCTACCAGATTTGATTATTGTAACATCCCAGAGTGTGAGGAGCAGGTCATGCAGACTGGAGAAG
Seq A exon
GTATATTTATTTTTCTGGGAAGAGGTTTTCAGCAAGGACATAATATTATTGCTGCTCTTTGTTCTTATTTTATTATTGCAGATTGGTTTCAAATATGAATTTAGGTCAAGCTGAAACTTGAAAAGATCTCAGCACAAGGATTGTTTTCCTAGCTGGTTCCAGTTTGAAAATAATGTTGTAAATATAGAAGATTTTTTTAATTATTATTATTATTATTTTAGTGATCTGCTGGTATTGTTCTGCTCTCATGCCTATTGATTCATTTAATTTTAACAAGAGTAAAAACTAACCCAATTTCTGTGTTACATATAAAACTCCAGTGTAATCAGTACATGCAAATATGTGACAAAGCCATCTCTGCAAATGACAGCTATCTCTAAAGCTTGATTTGTCTGACTAGGCTATCATTCTGAGTCGTCTGGATTCCTTTAATCATTGTTTAGGATAAAAACTTCTAGAAGAACAAGACATTTCTATTATTTCTGTTTTCCTGTCAATGTAGTCTTTCATGAGGATCAGAGTTCAAGGGCTGGCGTGAACCTTGCTTTGTTTTCATTGTACATAG
Seq C2 exon
ATCCTACAGTGGAGTGCATGGAATGTAATGGTGAAGATTATCACGGAAATGTTTCCAGAACAGAGTCTGGGCTTGAGTGTCAGCGCTGGGATGCCCAAGAACCTCATATGCATGGATATACCCTGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028886:ENSGALT00000044267:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=80.4)
A:
NA
C2:
PF0005113=Kringle=PU(48.7=86.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTACGCCTGAGAAACACCCC
R:
TGTTTCAGGGTATATCCATGCA
Band lengths:
294-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]