GgaINT1004861 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GHE8]
Coordinates
chrLGE64:520667-522774:+
Coord C1 exon
chrLGE64:520667-520990
Coord A exon
chrLGE64:520991-522450
Coord C2 exon
chrLGE64:522451-522774
Length
1460 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TCACTATATCTCAATTACAGGAC
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTTTTGCAAAACCAGCCCCACTCCGATTAGTGGATGGATCAACCCACTGCTCTGGGAGAATCGAGGTGTTCTATGGCCAGCACTGGGGAACTGTGTGTGACGACGGCTGGGACTTGGCCGATGCAGAAGTCGTGTGCAGGCAGCTGGGCTGTGGGAAGGCCTTGTCAGCTCCCCATGGGGCTCACTTTGGGCAAGGATCTGACCCCATCTGGCTTGATGATGTCAGCTGCACAGGGACTGAAGCTGGCCTCTCCACATGCAAAGCCAGTGCTTGGGGAAGCCATAACTGTGGGCATGGAGAAGATGCAGGCGTGGTGTGTGCAG
Seq A exon
GTACCCTTAAAGCAATGAGCATTAAAGAATATACTATCTTGGGTCACGCTGGGGCCCAGGTCCTTCAGCACTAATAGGTGCTTGCAAAGAAAGCAGCACAGAGGGCTTCAAAATGATGTGGCTATATCCATAGACAATTACAACTTGTCTTTCCTTAAGTAGGTCTTTGTAATGGGGTGCTTCCAGGGGTCAGTTTGCTACCACAGATAGTGGTACACAGAGGGAACACATTTCACTGTGAGGTGTATTCTCATATCAGTTACTCTACAACCCAATAACAGGGTTTATCTTCTTATTGTGTAAAGAGAAGAGCATGTGAAGTACAAGGAGTATTACTGCATAAGTCAGCCACAGCCCCAAGTGACCAAGTTCTCAAGTTCGATCATTCTTCTTTCTCCTGTTTGTCTTCCTTCACACATTCCCAAAAACATTTCTGTTAAGGATGGCTGTAGGTCTCCCAGTCCACTGCTCTGACAGTCCTGAGCAGATCCCATCAATGGCTGCTTGGTTTGAGGAAGAGGAATTTATCTTTCAAACATCAGACACACAAAAAAATTGTAGAATCAGAGAACCATAGAGTGGCTTGGGTTGAAAAGGTCCCCAAAGTTCATCTAGTTTCAACCGCCCTGTTGGGCAGGGTTGCCAACCACTAGACCAGGCTGCCCAGAGCCACATCCAGCCTTGCCTTAAATGCTTCCAGCGGTGGGGCATCCACCACCTTTCTGGCAGCAATATGAAGATTCTGAATTAAAAACGTGGGTTGGCTTCACATCTGTGAAGGAAATAAAAACTTCTGGTGAAATTAGTCCGTCTTGTGTCACAGCTGTCCCAAGAGAGATGCTGCTGAGCATTTAAACGTGTATAATAGGCCACACCAATTCTGTCCTTGAATCTTATCGCTGTTCAAGGAATATTAATCAACTCTCAATATTAATTGCAGAACTTCACCTGAGCAAGGACCCCTGCTCCAAATACTTGTCGCTCACCATCAGCAGAGCTTTACAACTTCAACAAATGTTATTGGCAGCTATGGGTAATTGTGTCATACAGAAATTGCTGATCCCAACTGCTAAGAGTCCTTAACACAGCCTTAATGTAGGCATGCCAGGGCTCCTACGGCAATGTTATTTCACTGGTTCCTTCTATGCTCAGCTCAGCAGCCCACATGACTCCCTCTAGTCTGTTTCAGCACAATAACAGGCTGCAGGCATAAGTGTCATCTTCTGAGAAAATAAAGGTTCAAACAGCTGACTGATTTTTAGGTGAGACTAGCCAATGAGAGCGGTAACCAGAGACCACTATTCTATGGGACAAAAGCTGTTGCGAGGATCTATTGGTCTGTTACGGAAAAAAATGAGCAGTGCCCTTGCCACACCACTGCTGTCCAGACATCATCAGCACAGACTAAAGTATGAAGGAAAGCAGAGAAAACTGATGTCTTCACTATATCTCAATTACAG
Seq C2 exon
GACTTGCTGAGCTTCTTCCAGTCCGGCTGGTGAATGGTTCCAATTTCTGCTCTGGAAGAGTCGAGGTGTTTCATGAGCAGCAATGGGGGACTGTCTGTGATGACAGCTGGGATTTAACAGATGCTCAAGTGGTGTGCAGGCAGCTGGGCTGTGGGGAAGCCACCTCAGCCACTGGCTCTGCTCGGTTTGGACAAGGAACTGGAACAATTTGGTTGGATGACGTGAACTGTGCAGGATCTGAAACTGCCCTCACTGAGTGCCCAGCCAAGCCTTGGGGAGACCACAACTGTAACCATGGAGAGGATGCTGGTGTGGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028894:ENSGALT00000044562:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.9)
A:
NA
C2:
PF0053013=SRCR=WD(100=89.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGTTCTATGGCCAGCAC
R:
GCTGCTCATGAAACACCTCGA
Band lengths:
343-1803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]