GgaINT1005258 @ galGal4
Intron Retention
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6320714-6325350:+
Coord C1 exon
chr19:6320714-6320898
Coord A exon
chr19:6320899-6325245
Coord C2 exon
chr19:6325246-6325350
Length
4347 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
CTCCTTGCTGTGTTGCACAGGGC
3' ss Score
7.53
Exon sequences
Seq C1 exon
ATTTCAACTATGGCGCAGAAGACTACGATGCCGAGGGCAACGAGGAGCCCAAAGCACTGCCGGAAGGCTCGGAAACCATGCCCTACATCGATGAGTCGCCCACCATGTCCCCCCAGCTCAGCGCTCGGGGCCAGGAGAGCGGGGATGGCGTCTCACCCACACCCGCCGATGGGCTCAGCACAGGG
Seq A exon
GTAGGTGGGCTGGGCACTAAGCTTGGCATTAGGACCTGTGAAAATCGGGGCTGGGATGTGTCTTCTTTCCTGGTGATGGTCTGGTGCTGCTGTGACGCGTGTGGCTGTCTGCTCGGCTTCCCAAACCCAGGGTTGGGGATGGTGTGGTGTCCATGGGTCACGTTAGTGATGTTGCCCCGAGACAGCAGGGCTGGGGGCTGGAGCCCAGCTGGGAGATGCTGGGATGGACTGCTGTGTTCCCCTCCCCTCTGCGAGGGGACAAGGAGCAGCCGTGCTGCAGGCTCCATCTAGTGGCGCTTGGGGACAGCCCGCCAGCTGCACTGGGACACCGTGTCCACCCCTTTCTCTCCAAAAGGAAACTCAGATTTAACTCCTTGAGCTCTCGAGCATCGTTGCAGAACTGCTGGGTTTTTATCCATCGCCTTTCCCAGGAGGGAAATTTGGAAAGCTTTGGAGTGGGAAACTGAAAATGGGGGGTGGTGGTTTTTTTTTTTTTTTCCCCCCCAAAAAAATTAGGGTTTCTCTATAACCCGGGGGGTGCTGTGCTGTCCCAGGGACCTGGGAGCTGCTGCCCCCTGGGCAGGGCACTGACTACCTCTGCTCCCCGTGCATAGCAACTGCTTTGTGGGGGCTGGGGGGGTGGGGGGGGGGGCAGGGACGTGGGAGGAGGCAGTGTGGAAAACGTGGAGGTTTTTGTCATGGAAGGAGTTAAGGCCCTAACCCGGATGTTGAGGCGGAGAAGCATAGAGGTGTGGCTTCCTCCCCAGGGTACGGGTGCTGCGCAGCATCCTCTGTGTCCAGTCCCATGTGGATCCCACGGGTCCCATCAGCCCTTGTTGAGCTGCTGTGTCCCCAGGCGTGGTCCCCTGGCTCCCCAGCATGAGACTGAGTCAGCCCCCAGCCTGTAACCCACTGCAAGGGGGTCTCATCCCCTGGCAGGGTGGTCCTGGGGAAGCAGTGGGGCTCTGGGTAGCCCAGGGCATGTTGCCTTCTGCTCTCGGGCAGTGATGCCATCACCAGTGGCCATCTCAGCTCAGTGCTGGCCCAGCACTAACAGGATTGGGGGCTTTAAAGCTCAGCACCAGCTCTGCCTCTGATCTTTTTATCTGCAGCTGCTGGGGCTTAGGGGAGTGCCTTTGGATGCCAGCAGCTGCGGTCTTGGAGCGCCTCTAGGTGGGCACACGTGTAAGCTGGAGCCTTGTCGTCTGGGTGGCATAGGGTGCCTGGCTCACCCCGACATCCCGTAACCATCTGGTGTTGAAGGTGGCGTCTCCGGCTTGGCAGGATTCTGGCAGGGTCTATCTTGTGAGCTCCTGGGGTGACTGCAACTGCACCCCTAACTCCCCCAGCTGCATGGGGACCAGCACATCCCACCTGCAACCGCGAGCATCCTGGCAGAGGCTGTGGCCACAGCACAGGATGCTGCTGGTTTGGTGCTGAAGATGGCTCTCCCTGCCTTGGTGACCCAATGGCTGTGTCGTGAGGTCCTGGGAAAGAGCCTTCTTACCAAATGTGCAAAGCCTGAGGGCTTCGCAGGCTCCAGAAAGCCCTTCCTCTCTTTCTTCATGCACCAGTGGTTTGTTTCAGGTTTTGAGAGGAATAGGGAGGCGAGAAGCTTGTGGGGGCAGAGCATCCGCAGCTACTGGTTCCCCTTTTTTTTTTGCGGAGGAGAGTGGGAAAACGGCTGAAACGGCTCTTGCATTATCTCCTGCAGATATCTGCATCTCCAATCCCTTCTTGCCCCACTCGCCAGGGCCAGCGAGGCCCTGCGGAGTTGTTAGATGCAGACCGGGTGCTCTGGGAAGTGCCGTGCATCAGCGCCGTTTCCCTGCTGAGGTTTCCTCTGGAGCAGGGAGGGGCTCAGGACCCTTTAGCTGTGGGGCTGAGAGCAGGGGGTTAGACGCCCTAACAGGACGTGATCCCTTCTGCTGCCCTCAGGGGTCACTGGAGAATCCCGTGGTCCAGCTCTTCCCCTGCATGAGGATACCCGTGGGTGATAGCAGGCAGGATGGGTGCTCTGTTGCTTGCTGCTCTGGCTGTTGAGTCTGGGGAGGGCATGGGGGTGTGGATGGAGGGTTGGTGACCCCTCCCCATGGAGTCCCCCCTAGCTCTCTGGCTTCCCCAGTGCTGCAACTCCGAAAAAGCGTTTGGTGAGCTGTCTTGACCATAGTGCGAGCAGCCCCACCTCCACACCAGACGTGCATTTCCTGTAGCGAGAGCGCAGGGCGGAGCGGCAGCGCTGGCTGCAAGCGGAGCAGAGCAGAGCGGCACGGCGGGCAGCGGCCCTACGCTGCTGGCGGAGCACCTGGGGAAAGCATTGGCCAAGGCAGAGCCAGGCAGCTCCGCCGTCCCCGCTCGGGTGACCTCGCCGTCCCTGCTGCCGTCACGTGCGGGTGGCTGTGCTGCTGCCTGGGGAGAGCCCCGCAGCGGGGCCAACGGCCTGAGCTGGGGCAGGCGGGAGCACCGGGGATCCCATAATGGCTCCTTTCATCCAGAGGCTGTGGCCGGCATCCAGGGCTGAGTCAGGCCCGGCTGGCTCGGCTGCGTAAGTCCTCACGTCTGAAGCCTTGTGGGGTCCCCGCAGCCCCCCTGGTGCCCAGCAGGCCATGGAGGAGGAAGAGGAAGCCATAGGGTACCTGGATAAAGTCCTGGAGGATGAAGATGACTCTGAGCCAGGAACCCCCACCAGCCCCGGGTCTCCATTCTCGGCCAGTGAGAAGGTGGGCACCCGTGGGGCACCCTGCTTCAGTGCTGGATGGGGTGGGGATGGAAATGGGCACCTTGCTGCTGCTGGTATGGGCTTAGGGGCTTGGGTGTGAGGTTTTCCAGGGCAGGGGTGAGGAGGGAAGCGAGTGCCAAGAGCTCGGCCGGTGTCTGTGTGTGCCTGCTGGGGTGGGCTGCTGTGCTGGCAGATCTGGGATGCTCGGGATGAGGCTGGACCGCTCTGTGTCACTGACTCACTGCACAGCCATGAGCAAACTCCCTAAATTGCTCCCAGCCCTGGTACTTTGGCCCGGGAGGTGTCCTGGTACCTCTAGCTGCAGCCCTTTGCCTTCTAGCCCACCTAGCATGGTTGCTTTGTGGGAGGTGGAGGAGATCTCCATCTCTGCTCTCCTTGGGGTCTCCTTCACGTGGTGGCCGCTGGACCCTGTGTGAGGGTGGACTTTTTGCCCCTTGGGGCCGTGGGGGTCCCACTGACACCATCCTCAGGGGCATCACAGGCCTTGGGTGCGAATGTGCCCCCCTTATCCTCTCAGCCTTCACGCAGGGCCCAGCCTCAGGGGAAGCAGGAAGAGCCCGTGACTAATGGTGGCAGCGAGCCCGCCAGCACCAAGCAGGCTCCCTGTGCTCCCCCCACACAGCTCCCTGCAGCCTGGCCTTAACGGTACCGCTGGGCAGGGAGCACTGGGCTCTGAGCTGGCTGATGGGACAGGACCGAGTGGTACCCACACAGAGTGGGACAGGAGTATTGTGTGCTTCCTGACTGTGCTTCCATCCGGGGGGGGGCCTGCTCATGCTGCTTATGGCACCCGAGTGAGGCTGCTGTTGCTGTACCCTTGGTGTGGTGCCCATGGCTGACAGAGAGAGAGGACCATGGTCCTGCTTAGCCATCCCAAATTGCTCAGAGCAACAAGCTGGTAGTTGTGATCCTCGCTCTCCAAATTAGGTTGTAACGTCTGGGTTGAGGCAGGGCTGTATCTCTGCCTGGTGCTGCTTTGGTTGGCAAAGCCCAGCTCCTGAGAGTGAGCTTTAGTGCTGGGATGAGAATTTTGGGCACAGAGTGTGTTCGAGGCAGTTGAAAGCCCAAGAGAGGCATTCAGGGTTGTGCCTGTCATCGCACATCATGACGTCATGGGTGGGATGTGCATCCCTTCTGAGGAGAGCAGAAGCTTCTGGTGTGCCTGGATGGGTGCTGTGCTCCCGGCAGTGGACCAGCCCTGATGCCACCAAGCAGTGACACGGGGGCTGGCAGTGACCACAGGGGTGGCACTTTCCCAGAGAAAACCCCAGCTGGGAAGAGGGTGGTGCTGGCTCACAAAGCCAGCCTTAGGGCATGGTCACTTTGGGCGCCTGTGGACTCTGCCCTGGGAGGGTTTTACCTCACTGTGCCGCCCTGGAGCGCTGCCTGCAGTGCTGGGCTCGGGGCCAAGCAAAGTCGGTGCCGCCCCAACTTCCCAGCTGGCTCCAGCCTGGCTGTGCTGTCCTGCAGGCACGTACCCGGCCCTTGCTGCAGTGTCTCTATGCTGGAAGGGATGTGTCCTCGTGGGGATGCTGGGGCTGGTGGGATGAGGGGCTGTGTGCCATGCTGACTGCTGGCTGAGCTGGGCTCCTTGCTGTGTTGCACAG
Seq C2 exon
GGCGAGAGAGATGCTGGCAAAGGGCTGGAGATGCGCAAGCTGGTGCTCTCCGGCTTCCTGGCCAGTGAGGAGATCTACATCAATCAGCTGGAGGCACTCCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364:ENSGALT00000006958:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]