GgaINT1005345 @ galGal4
Intron Retention
Gene
ENSGALG00000002200 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr14:14918715-14919467:+
Coord C1 exon
chr14:14918715-14918838
Coord A exon
chr14:14918839-14919386
Coord C2 exon
chr14:14919387-14919467
Length
548 bp
Sequences
Splice sites
5' ss Seq
ACTGTACGT
5' ss Score
6.33
3' ss Seq
GAGAAAAATATTTATTACAGGTG
3' ss Score
4.43
Exon sequences
Seq C1 exon
CTGCACATCCAACAGCCTGCGGCACTGTGTGAGCGCCGGGGAGCCAATCAACCCCGAGGTGATGGCCAAGTGGAAAGCATGGACAGGGCTGGATATCCATGAATGCTACGGACAAACAGAAACT
Seq A exon
GTACGTTGAGCTTTACAGGTGAAAAATATGTGCTTTGCAGATACTGCAATAAATTCTATTCAGTTTGCCAAGAAAAAGTCATTAAAAAGATTGTACGCAGTTGTATTAGGTTTACGTACTCCTCCTCACTTCACCACATTCCAACAACACAAATTCATCACAACTATTCCACTATATACAGTTGTGACTTTTAGCGAGAAAGTCACTTCCAATAGGCAACGATGAAAACGCAGTTTTTTTTCAACTCATAGGACAGGCGTAATGGCTCCCCAAAAAATCCAAGGCCTGCTCTTCATGTGAGATGCACTATTTGTGACCGCCTTCCAAATTCTGCTTTGAACTCTATCTTTGGAATGCTCATGTTGTTTGGGGCTCTGGGCAAGATTTCCAGAGTGTCATTTATTTCATTGGACGTATGATTGTAATGAAGGGATCGTTATTTTCTACAGAATGCTATGTTAGCTGAGAATAAAAGCTAAGCTAAAGACTGAATATACAAAGACTGAACATACAAGTCACTGTTTGACTGAGAAAAATATTTATTACAG
Seq C2 exon
GTGCTTGTCTGTGGAAATTTTAAAGGAATGGAAATTAAACCTGGCTCTATGGGAAAGCCATCACCAGGGTATGATGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002200:ENSGALT00000003444:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACATCCAACAGCCTGC
R:
ACATCATACCCTGGTGATGGC
Band lengths:
201-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]