HsaINT1002663 @ hg38
Intron Retention
Gene
ENSG00000005187 | ACSM3
Description
acyl-CoA synthetase medium-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:10522]
Coordinates
chr16:20784984-20786158:+
Coord C1 exon
chr16:20784984-20785107
Coord A exon
chr16:20785108-20786077
Coord C2 exon
chr16:20786078-20786158
Length
970 bp
Sequences
Splice sites
5' ss Seq
ACGGTACCT
5' ss Score
6.79
3' ss Seq
TTTTTCTTCTTCTTAACTAGGTG
3' ss Score
11.35
Exon sequences
Seq C1 exon
CTATAAGTTTAAAAGCTTAAAGCACTGTGTGAGTGCTGGGGAACCAATTACCCCTGACGTGACTGAAAAATGGAGAAACAAGACGGGCCTGGATATCTACGAAGGATATGGACAGACTGAAACG
Seq A exon
GTACCTGACCTCACTGAAAAGACATAGCTGGATTCCATTTAGTCAGATGAATAAAAACCAAAGTGTCCACAGTCTCCTTATGATTATTTGAGGGATAGGAGTTGAGTGGTTAGAAAATGTTTAAAAAAACAATGCTTGCAAGAACCTAATTGCAAAAAAGCTCTGTTAACAGATAGTTGTTTAAATAGCCATTCATTGACAAACACCACTGTTAATGGATCAGAGTAAGGGCATTACAATATTTTTTTAAATGAAATAATACTGGATCTACTGAAAGAAAGAATTCCTCCCAGTGTGATAGGGAAGTATCTTATTTAGGGCTGCCTCAAAATGGAAAATGCTGAGATCCTTGCTGCCTGAAATATTAAGAGTTTGCTGGACAACTCCTTAGCAACCATACTCTAAAAAGGATTTTTTAAAGAGCTCATAGAGATAAGGAATAAGAAATTCTAGAGGAAATGAATGAAATAAGAACAAAAAATGAAATAAGAACAAAAAATGAAATAAGAAAAAAGAACAACAGTGGTTATTTTGTAGAAGAGGGAGGAGTAAGATGAAATAGATAAGGGAAAAGTTGAAAAAACTTTTCACAATGTGTCTTTATAATGCTTCAATTTATGAACCATGAGAATGTATCACCTGGTAAAAAATGAAAATATCAAAAATAAAAATCAAAAATTGAAAAATTCATTAACTAGAAATAGCATAACAAGTATGCTAATATAAATGCAAATGTTAATATACTCATGTTTTGATAAATATGGATATATGAGTAATTATTGTTATAACTATATTTTATACATATGCATGTATTTATATGTTATCACTACATTCCATGAGAGTATAGCATTCATTTTGAGCCTAGTTCATAGTAAGTTTTCAATAAATAATTTGTTGAATGAATGCATGATAGATGAATAAATTTTAAGTGACTTGTAATGTTATCTTACTTTTTCTTCTTCTTAACTAG
Seq C2 exon
GTGCTAATCTGTGGAAATTTTAAGGGAATGAAAATTAAACCTGGCTCAATGGGAAAACCTTCTCCTGCTTTCGATGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005187:ENST00000289416:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(11.7=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(11.1=67.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGTGAGTGCTGGGGAA
R:
TTAACATCGAAAGCAGGAGAAGGT
Band lengths:
182-1152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains