GgaINT1005463 @ galGal4
Intron Retention
Gene
ENSGALG00000003028 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr17:6913917-6915052:+
Coord C1 exon
chr17:6913917-6914062
Coord A exon
chr17:6914063-6914931
Coord C2 exon
chr17:6914932-6915052
Length
869 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
AGACATTCCTTTTTGCTCAGGCA
3' ss Score
3.67
Exon sequences
Seq C1 exon
GGGACACGCAGTGCAAGCACATGTGCAGGACCATTGAGGATGAATTCATGGTAAGCCGTGAGGACAGTTTCATAGATGGAACCAGATGTGAGCCTGATAACTCTGAAGATGGGACTTTCCATCTGTGTGTAGCGGGAAGCTGCAGA
Seq A exon
GTAAGTGGCTGAGGAATCCAGGTGAAGCTCTGTAATCTGGGCTAAAGGAATCAGTTGAGTAGGATCCAAGGGAAGAAACACACTGAGTCCTTTCCAAAATAAGGAATCACTGGATCCAATGCTCTCTAGCTAAAGTATTTTTACTAATTTTGCAGTATTATTCCCCCCAGTGTGTGCATCTTAGTAACTCCTCAGTGCTGACCATGTCATTTTGTGTGTTGTTTCTTTACATTCCTAAGGTATACTTTTTAATTTCTCCCCTAACTCCCCAGATTCTCCTGGTGTTCAGAATGCTTTGTAATGTATTTCCAGCTAATGAACAGCAGAGGGCATAGACATAATCTATTCTAATACCTGCTGTTTCATTGGCAATAGTGATAAATATGTGTGCTATGGCAGCATCCAAAGCCTCTAGCATAAATTCAGCAGTTGCACGTGTTTTGCTGCTAAGCCTGCTGAGATCCTTCTGCAGCTTTGTGTGAATTTCTCTTGTTCATGGGAATGAGCATAGAATCTCTGCTCTGAGCTCAGTGGGATTGAGGGCCAGGCTGAAGCATGTGAGCTGGGTGTGGATTTTGGGTTTAGGTCACAGGAGAAATCTTTCTGGGCTGCTGCTTATGGGAAAGAAGATGTCACACAATTAATGAAACTTTTGTGTGCCCTTAGCTAAGGCTTTGCAATCCCTGGCTTTGTGTGCTGCTGTACAAACGCAGACCTAGGGGTAAATGTAACTTTGCCTGTGCTGTCGTCTTAAATTCACATTACAGATAAAAAAAAAAAAGTTTGAGGAATTCAGGTAATGTTGCTTTCGATTGATTGCTTTCTTCTCAGAATTAGGCCAGTTTTGACAGACATTCCTTTTTGCTCAG
Seq C2 exon
GCATTCGGGTGTGATGGCCAGATGAACTCCAAGAGGGCAATGGACTCTTGCAAGGTCTGTGGGGGTGATAATACCACCTGTATGGAAGTGAGTGGATCTTACACAGAAGGAAAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003028:ENSGALT00000004792:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(10.4=31.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGTGCAGGACCATTGAG
R:
AGCTTTTCCTTCTGTGTAAGATCCA
Band lengths:
246-1115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]