RnoINT0013301 @ rn6
Intron Retention
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5541790-5542412:+
Coord C1 exon
chr3:5541790-5541938
Coord A exon
chr3:5541939-5542291
Coord C2 exon
chr3:5542292-5542412
Length
353 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
CAACATCCCTCTTTGCACAGACC
3' ss Score
6.72
Exon sequences
Seq C1 exon
GGGATACTCTGTGCAGACACATGTGCTGGGCTGTTGGAGAAAGTTTCATTGTCAGCCGTGGGGACAGTTTCCTCGATGGGACCCGTTGTGTGCCAAATGGTCCTCGGGAGGATGGGACCGTGAGCCTCTGTTTGTTGGGTAGCTGCAGG
Seq A exon
GTAGGTGTGTGGACAACCCAGGTGTCCCTCTGTCTTTACGAACTCAAGGTTTTTCTGGTCTCGCAGAGGGCTTCTGAGCGGGAGGAAAGGGGAAATGATCTGTGGGGCTAGCTCAGTGCAGCTGCGCTGGGTTCGTTGTTGGCAACAGGATGGAACTTGGAGTCAGCCTATATTACAACCCAAACAGGAAAGTTATCTTGGGAGCACCCTAGGAGTTATACAGATATCAGGAGCTTCAGTGAAGCTACAGATAGTTTTTGTGAATCTGAGAGTCTCACAGCCAGCAGGGCTGTGGTACCAGGGTAACCAGCACCCCAATAACACAGGTTTTTCCAACATCCCTCTTTGCACAG
Seq C2 exon
ACCTTTGGCTGTGATGGCAAGATGGACTCCCAGCAGGTTTGGGATGCGTGCCAGGTGTGTGGAGGAGACAACAGCACCTGCACTTCCCAAAATGGCTCTTTCACAGCTGGGAGAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780:ENSRNOT00000007640:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGACACATGTGCTGGG
R:
CTCTCCCAGCTGTGAAAGAGC
Band lengths:
254-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]