GgaINT1007653 @ galGal4
Intron Retention
Gene
ENSGALG00000004622 | C17H9ORF114
Description
uncharacterized protein LOC417203 [Source:RefSeq peptide;Acc:NP_001264604]
Coordinates
chr17:5279480-5280170:-
Coord C1 exon
chr17:5280023-5280170
Coord A exon
chr17:5279839-5280022
Coord C2 exon
chr17:5279480-5279838
Length
184 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGCGCCTTGGTCTGTTTCAGGAA
3' ss Score
10.81
Exon sequences
Seq C1 exon
GCACATGCTTGTTGTATTTGGAGGTCTTCAGGGCTTGGAAGCTGGGGTTGATGCAGACCCAAACCTGGAGGTCACCGACCCGAGCGTCTTGTTTGACTTCTACCTGAACACCTGTCCCAGCCAAGGCAGCCGAACCATCCGAACAGAG
Seq A exon
GTAAGGCAGGGGCTGATGACATGGGAGCTGCAGTGCCTGTGTGCACAGAACATTTCTGTCTCTGGCAGGGTCACACAGCCAACCACGATGTTGTTCCCCACAGTGATGCCTCAGCCAAGAGCTGCTGGCTTGCCCAGCAGGCAGCTGAGGGCAGCAGTTCTGACTGCGCCTTGGTCTGTTTCAG
Seq C2 exon
GAAGCATTGCTGATCTCTCTGTCGGCACTGAGACCTCACATTGATGAGGCTGTGAAGACTCCCACTGACAGCTGAGAGAAGGAAAACCACTGACCCTGTCCTCTGCTTTGGACTGTGTCTGGGAATAGCCTGTTGCTATTCAGAGAATCACTCCAGGAACCTAGCAGGGCCAACCTTGGGGAAGCTGAAGACACAAAGTGACTAACGCTGGCACAACTGTTCAACCAAGTCTCCAGCATCTGTGGACCATTCTGCTGCAACATCCAACCAAAAGCTGGTCAGCAAACCGACTGTCAGCAATTCAGATGTCTCAGATAGAGAATAAAACAGTACCAAACCTCTCTTTCCTTGAAAGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622:ENSGALT00000007359:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.292
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=PD(3.4=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCTTCAGGGCTTGGAAG
R:
CCCAGACACAGTCCAAAGCAG
Band lengths:
251-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]