HsaINT0025308 @ hg38
Intron Retention
Gene
ENSG00000198917 | SPOUT1
Description
SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr9:128819651-128823894:-
Coord C1 exon
chr9:128823747-128823894
Coord A exon
chr9:128822834-128823746
Coord C2 exon
chr9:128819651-128822833
Length
913 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTGCCACGCTTCTCTTCCAGGAA
3' ss Score
11.31
Exon sequences
Seq C1 exon
GCATGCTCTTGTGGTGTTCGGGGGCCTCCAGGGTCTGGAAGCTGGAGCGGATGCTGACCCCAACCTGGAGGTGGCTGAACCCAGTGTCCTCTTTGACCTGTACGTCAATACCTGTCCTGGCCAGGGTAGCCGTACCATCCGCACGGAG
Seq A exon
GTGAGCCCGCCTGCCTCCCCGACTGCCAGCCACTGGGGCCTTGGGATCTGTCCGAGGGGCGGGTGCTACTCTTGCCCTGTCACCCACCCTTGCCCGTGGCTGCCTTGTCTGGAGGTGGTCCTCTCATCCCCCTTGGCCTCTTGCCACAGCGACGAGACATGAGTGTAGCTGGGAGTCAACCATGGGTGCTAGTGCCCGTCCTGTGCTCCCAGACTGGGTGACCCAGGGGGCCCTGCCCACCCCTGCTCCGGGCCTCTGGTTCCTTAGCCGTGCGCTCAGTGATCTCCCAGGGCCCTGGTTCTGCCACTTCCTTGTGTGTGACCACGGTGGGCACAGCAGCTCTCCCCTTGGGGTCTCACTTGCATCTGTCCCACGGGGGAAGCCACGTGCAGCTGGAGCCTTCGTCCTGGCCTCATGGAACCTGTGTACCCACTTTTGGGGTCAGGCATAGGACGCTGTGCTACGGGAACTCTGCTGGGAAGGCTGGTACTCCCATCAGTCTCGCCGGGCCGACAGCCCTGTCTACCCATCCCTAAGGCCTTGCCCAAGCCGAGCACTCTGAGCCTGACAGCCATACCCCCCAGCAGGAACCCTGGCTGCCACCCTTCCAACCCCTGCACGAGGGGTGAAAACTTCTTGCCCCTCTTCTTGCCCTCCCCTGGCCCTGGGAGGTGGGCGTTGTTACCTTCGCCCCCATTTTACAGAAGAGGAGCCTGAGGAGCAGGCTGTGTGGTCCTCCAGGTGGCAAGTGTGCAGTGTGAACCTGGGCCTGTCATTAACCTCACCAGGCCCTACTAAGGACAGGGGACCCCAGTGGGCCAGGTCTCGGGCAGCCAGGCACTGAAGACAGGCTGGGAGCGGGGGCACCCGCTAGCCCCCCAGGCCCCAGCCCACTGCCACGCTTCTCTTCCAG
Seq C2 exon
GAAGCCATCCTCATCTCCCTGGCCGCCCTGCAGCCTGGCCTCATCCAGGCGGGTGCCCGGCACACCTGAAAGTTCTAAGGGGCCGAGGACATCAGTGAAGCAGCAGTGAAACCAGGGGCTCTGCAGGTCACTTGGGACGGACGCCACCAGACTTGTCTCCAAAAATCACCACCTTTAATACTCCCCGGCCTGCACACACCCACAGTCTCACTGGGCTCCACCCTCACTTACTGCCCGCCGTGATGGCCTTGAGGCTGCCTGCCCGCGCCAGGATGTTTGGCACAAAGAGCAGCCCCGAAGCCCGCTCAATGCTCTCGATGGGCACCAGGAAGCGCTCCAGTGGGATGGCCTCATCCACAGGTGCGTTGGGCATCACGTAGGTGCGGAGCTCAATTTGCCCACCTGCTGCCTCCAGGATCAGCACCTTGAAGAAGTGTGTGGGCACTGCCACGTGGTTCTTGCCGATGACCTGGTACTTTACGTAGGATTTCCCATCAGCCTCTGTCCTGTGGGCAGACCCAGGCACACGTGGGCAGGGGGCCTGGATGAACCCAAAGCCACCTCTTCCAGGCAGCCTTCCCTGATCTGTCCTCTAACTTCTGTCAACCTGCAGGACCACGCCCTCACTGTGAGACTTCTGTAGCCTGCCTGGCTCCTCCTTGAGGCTGGAACTCTCTCCAGGGTGGTTAACTCTTTCCCTCTGTTTTCCTTATGCCCAACACTGGGTCAGGCAGAGTGGGCGACAATAAACGCTGCTAGGAGAATCGAGCCTTCTGAATATTCACATTCGTCTGAGGGGAGACTTAACGACTGTCCATCTCTCCCCACAGAGGTGAGCAACAAGTGGGCAAGGACCATGACAGGTGATATCCCAGCACCAGCACAGGTGCCAGGACACCGGACGGGGGCTCCCCCTCAGCAGAGTCTCCTCCCTTCCACCAGGCCCTAGGAGGCACCTGCTAATGAAATTTGATCAGTGCCCCAACCACCGCCTTGGCCAGCCTATGCCGAGCCCTTACCATGGACCAGGCCCTGGGGAAGCATGTGACATCAACCAAGAGGTCACAGGTTTTGCAGAGGGGGACACAGGTCATTTGCCCACAGCACCAAGGAACTAGGTGATGAGGCCTGGACTCCATCCCGAGCCTGTGGATTCCAGAGTGAGCTGCTCAGCCTGGACCTGTTGCCTCTCAGCCCCAGCCCTCTGCAGGCCAGAAAAACCACGGAGCACACCCAGAGGTGCTCAGTTGCTTCCACCTGAGAGGCAGGGCTGCACAGGAGCAAGAGTGGAGGCCCTGGGTCAGGCAGATCTAGATTCAAACTCCCGAGAAGGGTGGAGGGAAGTGCTCCAAGCAGAGCAGAGACTGAAGGCGGGAGAGCCTGGTGCACCGCGGACCTGCAGGGGGAAGGCATGAGAGCTCGGTGCACTGGGGACCTGCATGGGGAAGGCGGGAGAGCTCGGTGCACTGGGGACCTGCATGGGGAAGGCGTGAGAGCTCGGTGCACTGGGGACCTGCATGGGGAAGGCGGGAGAGCTCGGTGCACCTCGGACCTGCAGAGGGAAGGTGGGAGAGCTTGGTGCACCGCAGACCTGCAGGGGGAAGGCGGGAGAGCTTGGTGCACTGCAGACCTGCGGGGGGAAGGTGGGAGAGCTTGGTGCACTGCAGACCTGCGGGGGGTTCCATATTGGCAGAACAAGATTGGGTGGGCATGCCAAGAGGTGACAGCAGGGAGAAGCGGGGGCAGATTCAGGGCCTGCTGCTGCCCATGGGCAGAGGAGAGATGGTCAGGGGTACCCGACAGGTCTTTGGCTGTGGAGGTGGAATGAGGGGACTCGAGGCAGGGAAGCTGACAGGCTTGCCAAGAAACCAGATGAGTAGGGAACTGGTATTGACCCAGAGCCTGGGGCAAGCCTGGCCCTGTGAGTGGCAGTAGGGGCCTCAGGTGAGTGGGAGGTTCTGCCGCCCCCCTGGTTTCCACCTTACCTGGGCAGGAAGAGTGGCCCTGTGCAGACATAGACGTTTTGGTAGCTGCGGGTCAAGCTGCGGCTATATTTCTCCAGGTTGTTCCAGGCATTCTGGTTGAGGTGGGGCACCTGGTAGGAGAGATAGGGCTTAGCAGGACTGTGGCTGGGACCCTTCCTCCTCTATCAGAGGGCCGCCCCAGGTCCTGAGGGGATGGACAGGCTCAGAGATATCCAGTGAGACAAGCGGGGGGAAACTGAGGCTCAAGGAATGAAAGTCACTCCCTGAAACCCAGGGCTGATAGAGTGCTAGCCACCACCCTCTGTCCCTCCCACAGCCCAGGTGTCAAAGTCTTTTCTCAGCTCCCAAGAGTCGAATGAAGGAAGAGCCTGTCTCCACCTTTCAGAGAGGACTGAGGCCTGTCCCCAGCCCCACCCAGGGTCTCCTGGGAAGACCAGCCCTTCCAACTACCAACCCGTTCCTTTTCCCAGTCTGAGCCACAGGAAGAGCCTAGCGGGGAATGCCATGAATCGACCTCCATCCTGAGCTCTCCAGGCCTGGGACAATGGAAAGTGGATAGGGGGCTGTCTTCCCAGAAGGAAGCTGGGTCAGAGGTTGGTGCCCCATGGGCTCCACCCAGAGCCCCATGGCAGTCTCCATCCATTGGTGCCAGGACCTGCTGGGAACAGGCTGAGAGGGTGGTTGGCCCAGTGCACAGTGCCTGGCACTAACAACCTGATCGTGGGCCAGGTGTCTGCCTCGAAACTGCCTGAAGGCAGGCAGGGTAGGACAATGTCTGGAGGCTCACGGTTTTATAGACTAGGGGTCCCCAACCCCTGGGCTACAGACCGGTACCAGAACCGGGCCACACAGCAGGAGGTGAGCAGCAGGCGAGCAAGGGAAGCTTCATCTGTATTTACAGCCACCCCCCCATTGATCCCACAGCAGCCTGAGCTCCGCCTCCTGTCAGATCAGTGGCGGCTGGAGATTGTCATAGGAGCTGGAACCCTATGGTGAACTGCGCATGTGAGGAGGTTGCGCGCTTCTTTTGAAAACCTAATGCCTGATCTGTCGTTGTTGCCCATCACCTCCAGATAGGACTGTCTAGTTGCAGGAAAACAAGCTCAGGGCTCCCACGGATCCTACATTACTGTGAGTTGTATATTTCACTATATGTTACAATGTAATAATAATAGAAATAAAATGTACATAAATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917:ENST00000361256:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.275
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=PD(3.4=43.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCTCTTGTGGTGTTCGG
R:
TGCAGGCCGGGGAGTATTAAA
Band lengths:
342-1255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development