GgaINT1007871 @ galGal4
Intron Retention
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:58050-58599:-
Coord C1 exon
chr16:58453-58599
Coord A exon
chr16:58228-58452
Coord C2 exon
chr16:58050-58227
Length
225 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TGTTCCCATGTCCCTTATAGGTC
3' ss Score
10.39
Exon sequences
Seq C1 exon
ATGGGGCTGTTGCTGGCAGCTGTGGGGCCGGTGACCGGGACGGTGACTGCATGGGCTGAGGGGGACCGTGGGGCCGGGCCCTGCGCCCTCCCAGTCCCATTTGCCCTCACACCCCACAACAACTTCAACCAGCTCCTACAAATTGAG
Seq A exon
GTATGGGGACACCAGGGGATATGGGGACACTGGGGGATGTCCTCTGGGGTGAGGGGGTTGGGGACACCCCCATGGCACACAGGGATGTGTGCACCCTTGGGTCCTCTCCTGCCATGTCACCCATGTCACCTCACATCTTCTTCCCCAGAGCTCCCATGTCCCCAGAGTTCCCCCCATGTCCCCATAACCCAAACACCTCCTGCTGTGTTCCCATGTCCCTTATAG
Seq C2 exon
GTCACCCCAGTGCAGGCAGAGCGCTGTGGGGCGCTGTGGGGTCGGGGGCTGCTCCTGGAGGCCCACAGCTCCCATCTGCCCCCCCCCAGTACCAGGAGTCTGCGTGTGGCCCTGGGGGGGCCGCGGGGTCACCTCATTGTGCAGACAGACAAACCTCTCTACGCCCCCCGACAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646:ENSGALT00000044830:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0183514=A2M_N=PU(17.0=26.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGCTGGCAGCTGTGG
R:
GGGGCGTAGAGAGGTTTGTCT
Band lengths:
308-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]