GgaEX1012094 @ galGal4
Exon Skipping
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:57670-58599:-
Coord C1 exon
chr16:58453-58599
Coord A exon
chr16:58050-58227
Coord C2 exon
chr16:57670-57740
Length
178 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCATGTCCCTTATAGGTC
3' ss Score
10.39
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGGGGCTGTTGCTGGCAGCTGTGGGGCCGGTGACCGGGACGGTGACTGCATGGGCTGAGGGGGACCGTGGGGCCGGGCCCTGCGCCCTCCCAGTCCCATTTGCCCTCACACCCCACAACAACTTCAACCAGCTCCTACAAATTGAG
Seq A exon
GTCACCCCAGTGCAGGCAGAGCGCTGTGGGGCGCTGTGGGGTCGGGGGCTGCTCCTGGAGGCCCACAGCTCCCATCTGCCCCCCCCCAGTACCAGGAGTCTGCGTGTGGCCCTGGGGGGGCCGCGGGGTCACCTCATTGTGCAGACAGACAAACCTCTCTACGCCCCCCGACAGACTG
Seq C2 exon
TGCGTTTCCGGGTCTTCTCCATGGACCCCGACCTACAGCCGAACCCCGAACCTGTCCTGGTCACCATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.117 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(17.0=26.7)
C2:
PF0183514=A2M_N=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGGCTGTTGCTGGCA
R:
CGTGATGGTGACCAGGACAG
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]