DreEX0071045 @ danRer10
Exon Skipping
Gene
ENSDARG00000038424 | si:dkey-8k3.2
Description
si:dkey-8k3.2 [Source:ZFIN;Acc:ZDB-GENE-100922-98]
Coordinates
chr16:16788526-16789382:-
Coord C1 exon
chr16:16789196-16789382
Coord A exon
chr16:16788869-16789040
Coord C2 exon
chr16:16788526-16788599
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTGTTTATTTTCTCTTTAAGATA
3' ss Score
9.79
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
ATTCCTCATCACTGCTCCGAGTGTGTTTCATGTTGGTGTGAAAGAACCTATAGTGATTCAGGTCGGGGAGGCACTGGTCGGCAAACCCGTGTCCTGTCAGTTAGAAACAGAGACGCGGGTTCCCATGTCCGCAAAGGAAACCAAAACAATACACCAAAAAGGAAAGTTTGAGACAGTGAATCTTGAG
Seq A exon
ATATTTGCAAATACAGTTTCAAACCTGAAGTCAATCAATGGAGAGCCTCCTTATCTAAATCTGGCATGTGAGGTTGATGGTCAGAGACAGCAGACGCGTGTTCTGGTCTCCAAACACAATGGCTACATCTTTATTCAGACGGACCAACCCATATACAACCCCACACAGAAAG
Seq C2 exon
TTCGATTCAGAATCTTCACTCTTGATCACTCCATGCGACCAAAATTAGAGATGTATGTTTATGTCTCTATATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038424-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(15.8=25.9)
C2:
PF0183514=A2M_N=FE(26.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCATCACTGCTCCGAGT
R:
ACATACATCTCTAATTTTGGTCGCA
Band lengths:
244-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]