MmuEX6077183 @ mm9
Exon Skipping
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34879477-34880606:-
Coord C1 exon
chr17:34880414-34880606
Coord A exon
chr17:34879756-34879957
Coord C2 exon
chr17:34879477-34879547
Length
202 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTTCTGTCTTGATAGGTC
3' ss Score
11.19
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GTTGCTCCTGTTTTCCCCTTCTGTGGTTAATTTGGGGACCCCCCTGTCGGTGGGGGTACAGCTCCTGGATGCCCCTCCAGGACAGGAGGTAAAAGGATCAGTGTTCCTCAGAAACCCAAAGGGTGGTTCCTGCTCCCCAAAGAAGGACTTTAAGCTGAGCTCGGGAGATGACTTTGTGCTGCTCAGCCTTGAG
Seq A exon
GTCCCACTGGAAGATGTGAGGAGCTGTGGCCTCTTTGACCTGCGCAGAGCCCCCCACATCCAGCTGGTAGCTCAGTCTCCGTGGCTAAGGAACACAGCTTTCAAAGCCACAGAGACTCAGGGTGTCAACTTGCTCTTCTCTTCCCGACGAGGCCACATCTTTGTGCAGACCGATCAGCCTATCTATAATCCGGGGCAGCGGG
Seq C2 exon
TTCGTTATCGGGTCTTTGCACTGGATCAAAAGATGCGCCCATCCACTGATTTCCTCACCATCACAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183514=A2M_N=PU(17.0=23.5)
C2:
PF0183514=A2M_N=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGTTTTCCCCTTCTGT
R:
CTCCACTGTGATGGTGAGGAA
Band lengths:
261-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: