GgaINT1007885 @ galGal4
Intron Retention
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:49617-50168:-
Coord C1 exon
chr16:49971-50168
Coord A exon
chr16:49693-49970
Coord C2 exon
chr16:49617-49692
Length
278 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GGTCTCTGATGTCCCCACAGGCT
3' ss Score
9.28
Exon sequences
Seq C1 exon
GCCGGGTGCCGGGCTGGGCACTGCAGGGCGCTCTGGGGATAGGGGACTCTCTGCTCCGCTCCCCCCGGGGCTGTGGGGAGCAGTCCCTGATGTCAATGGCACCCACTGCTGCTGCTCTGCGCTTCCTGGATGAGAGCGAAGGGTGGGGGCAGCTGCCCCCAGGGCACCGACAGCGCGGCCTCAGAACCCTGCAGCAGG
Seq A exon
GTGAGCTATGGGGCAGGCTGTGCTTTATGGGGTGGGCAATGCTTTATGGGGTGTGCAGTGCTCCAAGGGATGTGCAGTGCTTCATGGGGGATGCAGTGGGGTTTGATTTGATTTGATTTGATTTATGGGTTTGCATTTCTCCTCCGAGGATTGCATCTCTCTATGGTGTTTGCAATGGGATGTGCAGTGCTCCAGGTGGAGGTGCAGAGCCCTATGGGGGTGCAGTGCTGTGTAGGGGATGTCTGTGGTGTCTCCAATGGTCTCTGATGTCCCCACAG
Seq C2 exon
GCTTCGAACGGGTGCAGAGCTTCCGCAAAAGTGATGGCTCCTATGGGGCATGGCTGCACCGGGACAGCAGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646:ENSGALT00000044830:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=44.8),PF076789=A2M_comp=PU(0.4=1.5)
A:
NA
C2:
PF076789=A2M_comp=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGGGGATAGGGGACTC
R:
CTGTCCCGGTGCAGCCAT
Band lengths:
236-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]