BtaINT0001405 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MP09]
Coordinates
chr23:27159570-27159859:+
Coord C1 exon
chr23:27159570-27159606
Coord A exon
chr23:27159607-27159783
Coord C2 exon
chr23:27159784-27159859
Length
177 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
3' ss Seq
AGCTGCCTCTCCCCTCCAAGGCT
3' ss Score
6
Exon sequences
Seq C1 exon
GAGACCAAGGACCACGCTGTGAATATCATCCAGAAAG
Seq A exon
GTTCTGAGTGTAGCGACTAGCAGGACTGGGGGCCAGGGGAGGGCAATTAATGGAAGCTGGGCAGCCCGGGTGGTCAGAGCAGGGAAGAGAGATTCGGTCCCCAGTGGAAATGTTGAGCGTAGCCTGGCCACAGCAGTAGGGAAGTGGGTGTGATCTCAGCTGCCTCTCCCCTCCAAG
Seq C2 exon
GCTACACGTGGATCCAGGAGTTTCGAAAAAGAGATGGTTCCTACGGGGCTTGGTTACATTGGGACAGTAGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006864:ENSBTAT00000045468:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PU(0.4=7.7)
A:
NA
C2:
PF076789=A2M_comp=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGACCACGCTGTGAATA
R:
CAGGTGCTACTGTCCCAATGT
Band lengths:
109-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]