MmuINT0026928 @ mm10
Intron Retention
Gene
ENSMUSG00000015451 | C4a
Description
complement component 4A (Rodgers blood group) [Source:MGI Symbol;Acc:MGI:98320]
Coordinates
chr17:34814792-34815234:-
Coord C1 exon
chr17:34815026-34815234
Coord A exon
chr17:34814868-34815025
Coord C2 exon
chr17:34814792-34814867
Length
158 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTG
5' ss Score
2.04
3' ss Seq
TGGCACCTCTTTTTTCCCAGGCC
3' ss Score
8.51
Exon sequences
Seq C1 exon
CCTCTGAACCCTTGGAGACTCTGGGCTCTGAAGAAGCTTTGTCCCCAGGAGGCGTGGCCTCCCTCCTGAGGCTTCCCGGAGCTGCGCAGAGCAAACCATGATCTATTTGGCTCCTACCCTGACTGCTTCCAACTACCTGGACAGGACAAAACAGTGGAGCAAACTGTCCCCTGAGACCAAGGACCATGCTGTGCATCTGATCCAGAAAG
Seq A exon
GTTCTGGGTTAAGGGAAAGCAAGAGTCAGAGCCAGGGAGGGCATGAAAGGCAGCCAGGAGCCTAGAGAGAGAAGCTGGGGTCAAGGGTAGGGCGCTGGGAGTACAGTCCTGGCCCAAACAGCAGGAGAGTAGGAACCTTGGCACCTCTTTTTTCCCAG
Seq C2 exon
GCCACGTTCGGATCCAGCAGTTTCGGAAGAAAGATGGCTCTTTTGGGGCTTGGTTACACCGGGACAGCAGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015451:ENSMUST00000160679:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACTCTGGGCTCTGAAG
R:
CAAGCCCCAAAAGAGCCATCT
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types