GgaINT1007895 @ galGal4
Intron Retention
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:46616-47002:-
Coord C1 exon
chr16:46792-47002
Coord A exon
chr16:46707-46791
Coord C2 exon
chr16:46616-46706
Length
85 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
AGGGGCGTGGCCTGTTGTAGGCG
3' ss Score
3.81
Exon sequences
Seq C1 exon
CAGATGAGGACTACGAGGACTACGAGGACTACGAGGAGGCGGAGCCTAAGGAGGGGGAGGAGCCTACGGAAGGGGCAGTGCCCGTGGAAGGGGCGGGGCCAGCAGATGACCCCGCCCCCCTCAGCCCGGTGTCCTTATGGGATGCCCGTAAGCGGCAACGCCGCAGCACACATAACCCTGCCCACGAGGTGGCCTTCCTCGTCTGCTTCCG
Seq A exon
GTGAGGGGCGGAACTTCCTGTCCCTGGGGGCGGGTCTTCCTGCTGATGGGCGTGGCTTATTGCTGAGGGGCGTGGCCTGTTGTAG
Seq C2 exon
GCGGAGCCCAGGGGTGGCACTGACTGGGATGGCGGTGGTGGAGATCACTCTGCTCAGTGGCTTCTCACCCCATAGAGCTGACCTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646:ENSGALT00000044830:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076779=A2M_recep=PU(24.4=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCCCGGTGTCCTTAT
R:
CAGGTCAGCTCTATGGGGTGA
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]