MmuINT0026978 @ mm10
Intron Retention
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34730624-34730989:-
Coord C1 exon
chr17:34730809-34730989
Coord A exon
chr17:34730715-34730808
Coord C2 exon
chr17:34730624-34730714
Length
94 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTGGCTTCTCCTCCCACTAGGCG
3' ss Score
10.33
Exon sequences
Seq C1 exon
GGGATGCCAATGAAGACTACGAAGACTACTATGACATGCCAGCCGCAGATGACCCCAGCGTCCCCTTGCAGCCTGTCACGCCCCTGCAGCTTTTTGAGGGTCGTAGGAGCCGCCGCAGGAGGGAGGCCCCCAAGGTGGTCGAAGAGCAGGAGTCCAGAGTTCAGTACACTGTGTGTATCTG
Seq A exon
GTGAGTGCAGAGAGCTCTGGGGAGAATGGTGGTGGGAAGAGGCGGGGTGTGGCACAGTCTGAGAATCTATACATCTGGCTTCTCCTCCCACTAG
Seq C2 exon
GCGAAATGGCAAGCTGGGGCTGTCTGGCATGGCCATCGCAGACATCACCCTCCTAAGTGGATTCCACGCCCTGAGGGCTGACCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418:ENSMUST00000069507:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076779=A2M_recep=PU(24.4=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTTGAGGGTCGTAGGAGC
R:
TTCTCCAGGTCAGCCCTCAG
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types