GgaINT1008195 @ galGal4
Intron Retention
Gene
ENSGALG00000025788 | CACNB1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr27:4111655-4112184:-
Coord C1 exon
chr27:4112126-4112184
Coord A exon
chr27:4111765-4112125
Coord C2 exon
chr27:4111655-4111764
Length
361 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AGCCTGTGTCCTTCTCACAGGAT
3' ss Score
9.49
Exon sequences
Seq C1 exon
GTGACAGATATGATGCAGAAAGCACTGTTTGATTTCTTGAAGCATCGCTTTGATGGCAG
Seq A exon
GTGAGGCGGGGGGCAGCGGGGCCTTCTGCTCCTTGGGGGGGGAACTCAACCCCACTGGAGAGCTTTCAACCCCATGGGGGGCCCTTAAGCCATGGGGGAACCCTCAACCACGTGGGAGGCCCTTAATCTCACAAGAGGGGCCCTTACCCCACAGGGGACCTCTAAGTCCCATGAAGGACTCTTAGCTCTATGGAGGCCATCAGTCCCTCCCTGGTTTGAGCAGGTTCTGCCCTCAGAGAGAAGGAGTCTCCACCTCAGCCTCGTGCTTGGGGTGGGAGGAAGGGCTGGCGGGAGGCTCCTGTGGGGAGCAGGTGTTTGATGGGGGTGTCTGGACCCCCGCCAGCCTGTGTCCTTCTCACAG
Seq C2 exon
GATCTCCATCACGCGGGTGACGGCCGACATCTCCCTCGCCAAGCGCTCTGTGCTGAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACACGCTCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025788:ENSGALT00000043800:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.202
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]