GgaINT1009595 @ galGal4
Intron Retention
Gene
ENSGALG00000026027 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
Coordinates
chr17:417293-417844:-
Coord C1 exon
chr17:417735-417844
Coord A exon
chr17:417419-417734
Coord C2 exon
chr17:417293-417418
Length
316 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CAGCTTCCTCTCTCCTGCAGGGC
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCGAGCGAGGACGGGGAGAGCGTGGGGCACTGCCCCTTCTGCCAGCGGCTCTTCATGGTGCTGCTGCTCAAAGGAGCTCCCTTCACCCTCACCACCGTGGACACGAAGAG
Seq A exon
GTGAGCGCTGCCCCGCGACGCGGTGCCGGCCCGGGGGCGTGGGGTGGGACAGCCCTGCCGCGTGCACCGCCCCGCCGGGTGCGGGGAGGTCTCACCGCGTGGGGGAGGGGCTGAGGACAGCCGTTGTACCCCTCACTGCCCCCCGTTGCCCTGAAGGAGAGCGGCGGGCGCTTCTTGGGCGGAGCTGCCGCGGGCACACCCAGGGCAGGGGCAGCCCGCGGGGAACACCTCATCCTTTTGCCCGGCACACGCCGGGTCCCGGTGTGCCGCAGATCCCCGGGCAACGCGGGTGACGGCAGCTTCCTCTCTCCTGCAG
Seq C2 exon
GGCACTGGATGTGCTGAAGGATTTTGCGCCCGGCGCTCAGTTGCCTGTTCTGCTCTACAACGGAGACTCCAAGACCGACACAGTCACCATCGAGGACTTCCTGGAGGCCAGGCTGGCCCCCCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026027:ENSGALT00000043084:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
NA
C2:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(13.1=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAGGACGGGGAGAG
R:
CTCCAGGAAGTCCTCGATGGT
Band lengths:
214-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]