RnoINT0037281 @ rn6
Intron Retention
Gene
ENSRNOG00000015184 | Clic3
Description
chloride intracellular channel 3 [Source:RGD Symbol;Acc:1307249]
Coordinates
chr3:2677140-2677453:+
Coord C1 exon
chr3:2677140-2677249
Coord A exon
chr3:2677250-2677327
Coord C2 exon
chr3:2677328-2677453
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCTCTGCCTGGTGTCCACAGGGC
3' ss Score
10.57
Exon sequences
Seq C1 exon
GCCAGTGAGGATGGCGAGAGCGTGGGACACTGCCCTTCCTGTCAGCGGCTCTTCATGGTCCTGCTCCTCAAGGGCGTGCCCTTCACACTCACCACAGTGGACACACGAAG
Seq A exon
GTGAGACACCACCCTGGACCCTCCCCTGGTCTCTGCCCACCTTGGGCCAGCCACCTCCCCTCTGCCTGGTGTCCACAG
Seq C2 exon
GGCATTGGATGTGCTGAAGGACTTCGCACCGGGATCACAATTGCCCATCCTACTCTATGATGGGGACGTCAAGACAGACACACTGCAGATTGAGGAGTTTCTGGAAGAGACATTGGGGCCACCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015184:ENSRNOT00000020497:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PU(41.1=81.1)
A:
NA
C2:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(8.5=25.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATGGTCCTGCTCCTCA
R:
GGCCCCAATGTCTCTTCCAGA
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]