GgaINT1009597 @ galGal4
Intron Retention
Gene
ENSGALG00000026027 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
Coordinates
chr17:416739-417161:-
Coord C1 exon
chr17:417055-417161
Coord A exon
chr17:416915-417054
Coord C2 exon
chr17:416739-416914
Length
140 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ACACTGCTGCCGCCCCACAGCGC
3' ss Score
8.87
Exon sequences
Seq C1 exon
GTTCCCCAGCCTGGTCCCGCGGTACAAGGAGTCAAGGCTGGCTGGAAACGACATCTTTCACAAGTTCTCCACCTTCATCAAGAACCCAGTGCCTGCTCAGGATGAGG
Seq A exon
GTGAGGAGCTGGGGGGCACGCCGTGCCGTGCCGTGCGGGGGCAGAGGCAGCGTCAGCCTAGGCCCGGCGAGAGCGGTGCAGGCACAGTGCTGGCAGGAGGCTGCCTGCAACCCTGACTGCACACTGCTGCCGCCCCACAG
Seq C2 exon
CGCTGCAGCGGAACCTGCTGAAGGCCCTGCTGAAGCTGGATGAGTACCTGAGCACACCCCTGGAGCATGAGCTGGCCCGTGAGCCCCACCTCCGAACCTCCCAGCGCCGCTTCCTCGATGGCGACCAGCTCACGTTGGCTGACTGCAACCTGCTGCCCAAGCTCAACATCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026027:ENSGALT00000043084:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(26.3=100)
A:
NA
C2:
PF134101=GST_C_2=FE(42.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAGGAGTCAAGGCTGGC
R:
ACGATGTTGAGCTTGGGCAG
Band lengths:
258-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]