RnoINT0037283 @ rn6
Intron Retention
Gene
ENSRNOG00000015184 | Clic3
Description
chloride intracellular channel 3 [Source:RGD Symbol;Acc:1307249]
Coordinates
chr3:2677590-2677954:+
Coord C1 exon
chr3:2677590-2677696
Coord A exon
chr3:2677697-2677778
Coord C2 exon
chr3:2677779-2677954
Length
82 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTGTCACCGTTGCCCCTAAGCCC
3' ss Score
2.59
Exon sequences
Seq C1 exon
CTTTCCTGGCCTGGCACCTAGGTACAGGGAGTCCAACACAGCAGGCAATGACATCTTCCACAAGTTCTCTGCCTTCATCAAGAACCCAGTGCCTACACAGGACGATG
Seq A exon
GTGAGACACAAGCCAGCAGGTACAGGCAGGAGGGCTAACGCCAGGCCAAGGCTGAGTCCTCACTGTCACCGTTGCCCCTAAG
Seq C2 exon
CCCTGTATCAGCAGCTGCTCCGGGCCCTGACCAGGCTGGACAGGTACCTGGGTACACCACTGGACCATGAACTGGCACAGGAGCCACACCTTTCTGAATCCCGCCGCCGCTTTCTCGATGGTGACCAGCTCACGTTGGCTGACTGCAGCCTGCTACCCAAGCTGCACATTGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015184:ENSRNOT00000020497:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.7=100)
A:
NA
C2:
PF134101=GST_C_2=FE(44.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGGAGTCCAACACAGCA
R:
CAGAAAGGTGTGGCTCCTGTG
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]