GgaINT1009598 @ galGal4
Intron Retention
Gene
ENSGALG00000026027 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
Coordinates
chr17:415522-416914:-
Coord C1 exon
chr17:416739-416914
Coord A exon
chr17:416358-416738
Coord C2 exon
chr17:415522-416357
Length
381 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TGGGCTGTTTGTTCCTGCAGATT
3' ss Score
10.57
Exon sequences
Seq C1 exon
CGCTGCAGCGGAACCTGCTGAAGGCCCTGCTGAAGCTGGATGAGTACCTGAGCACACCCCTGGAGCATGAGCTGGCCCGTGAGCCCCACCTCCGAACCTCCCAGCGCCGCTTCCTCGATGGCGACCAGCTCACGTTGGCTGACTGCAACCTGCTGCCCAAGCTCAACATCGTGCAG
Seq A exon
GTGTGTGGCTGTCCCCGCTGCACGCTTTCTTTCCTTGCCTTGCCTCCTTGGTGCTGCCTGCCCCACATTCTCACCTCCTCCTGGGTACTCACCTGCCACCTGCCTGTACTCCCTTTTCCCTCTGCCATCCCCTGGCTCTCTGTGCGCCCCAGGTGCCCGCCTGGTGCCCCACAGCTCCAGCCCAGCACTGCACCTTTCTAGACCCCACTCCCTCTGCATCCCGCACCAGGTGCCCCTCCTCCATCCTGTGCTGTGCCAGCCATGTCCTCTTGCCCCGTGCCATCCTCCCTGGCTCCCACCAGTGAGCACCACCAGCTCCTGGCTGCAGGCCCTCCCCCAGCACACCGCAGGCACACAGCAATGGGCTGTTTGTTCCTGCAG
Seq C2 exon
ATTGTCTGCCAGCATTACCGCCGCTTCGGCATCCCCAAGGACCTGCAGGCAGTGTGGCGCTACCTTAACAACGCTGCTGAAACCAAGGAGTTCAAATACACCTGTCCCAGCAGCGAGGAGATCGTGCAGGCCTACCGCTCTGTCGTCCGGTCCCCGCAGTGAGCCGGGCAGACACCCAGGCGGGCACAGGGCTGGGCAGCAGCTCAGCACCACCTGGTGCTGCTGCTCCCACCACCATCCTGCCCGCACATGCCTGGGAGGGCAGAGCATCAGCACCCAAATTTCCCCAGCTGGCACCCAAGGTGCCTCGCATTGAGCCTGCCAACGCTTTCTTGCTTCTCGTGTCACCCTCCCTGCCTTGCCGGGACACCCTCGACCCACCCTGTGGGGCCTCAAGCATTAAGGATGGGTACAGCCATGGGCACTGCTTGTAACAGAACTGGGCAATGCTGAGGGGAGCAGTGGGGGCTGGGGAAGAAAAGCTGCCTGGAGAGCAGTGCACTGCAGTGGGAATCCCTGCAGTCTCCCACCACGTGAGCTGCCCTAAGCGGGGGTACGGCCAGGACAGCACGCACTGCAGGGTGTCCGTGAGCAGCAGCACAGGGTGAAGGGAATCGGCACAGCTGTGACAAAGCCCTGGGAACGGAGCTGGGGGGGGACACTGCAGCACCCTGCCCCGTCACCACTGCCCCCGCAAGGAGAGCAGAGGACAACGTCCTGCCAGGACTTGCTGCTAGGAAGCTCTCTGGAGCCGATTTGGGACAGGGATAGGGATGAAGTGGGGAAAGTCCAAGCCATGCATCAGAGCACCTGGAAATCAATAAAGGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026027:ENSGALT00000043084:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(42.3=100)
A:
NA
C2:
PF134101=GST_C_2=PD(16.8=42.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGTTGGCTGACTGCAA
R:
CCAGCTGGGGAAATTTGGGTG
Band lengths:
342-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]