RnoINT0037284 @ rn6
Intron Retention
Gene
ENSRNOG00000015184 | Clic3
Description
chloride intracellular channel 3 [Source:RGD Symbol;Acc:1307249]
Coordinates
chr3:2677779-2680565:+
Coord C1 exon
chr3:2677779-2677954
Coord A exon
chr3:2677955-2678035
Coord C2 exon
chr3:2678036-2680565
Length
81 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
ACACTCTGCTGCACCCACAGACC
3' ss Score
7.97
Exon sequences
Seq C1 exon
CCCTGTATCAGCAGCTGCTCCGGGCCCTGACCAGGCTGGACAGGTACCTGGGTACACCACTGGACCATGAACTGGCACAGGAGCCACACCTTTCTGAATCCCGCCGCCGCTTTCTCGATGGTGACCAGCTCACGTTGGCTGACTGCAGCCTGCTACCCAAGCTGCACATTGTGGAT
Seq A exon
GTGAGTGAGGGAGCAGTGGGTAGGTGTGGGTAGGTTGGGGGCATTGAGTGAGCCCTTCATCACACTCTGCTGCACCCACAG
Seq C2 exon
ACCGTGTGTGCGCACTTCCGCCAGAGGCCCATCCCTGCGGAACTGTCCTGCGTTCGCCGCTACTTGGACAGTGCATTGCAGGAGAAAGAGTTCAAGTACACGTGTCCACACAGCGCAGAGATCCTGGCAGCCTACCAGCCTGCTGTGCACCCCCGCTAGCACCCCTACCTCCATACACTCATCTGCATTCCCATAAAGCATCTCTGCCACAAGTAACCGTGTCCTGAACATCCATGGCCAGAGACCCACCATGATGCCACCTCACCTATAGTGAGAAACATAGTTAAAGGTGGTTGCCCAGAGAGATGAAGGCAAGAAAGTCCACTGGGCAGAGCACAGTGCATCCTCCTCCATGGTGTGGGACAGAGGCCTGGGGCCCCTTACAGCTGCCTTGGCACAGAGGCATCAGGGATCTAGGGGACTGGATTAGTCTCCCAAACCAGTCAGGCCAGCACTGGGTGGGGTGCCCTGGATGGCCAAGAAGGGTGGAGAACAGAACCCCATGGAGCTCAGCCTTTCGGATCCAGGCCAAGTGGGTGGGGGCAGGCCTACATTCCTCAGTCCAGCCACAGGCTGTGGGCCAACCCTATCTCCTATGAGGGGCTTCCATTGCCTGATGCCCTGTGGGGGCCTCCAAGACAAGTCCCCTGTGCACCTTTGTATGGGACAGGTATGATCTGCCTGGCCTGGGTGGGGCTTGGAAGTGTGGGACACCATTCTAAGCCTTAGAGAGTCCTGGCTCTACTAGAGCAGGACTCCCTCAGCTTCTGCGCTGACCACGTGGAAATAACACAATAGGTCTGAGAAAGCTCGCTGCCTGCCCTCAGACCCAGGCAGGAGAGCTTCCTGGATGCTGAGAGCCTGATGCCTCTGTTTGCATCCAGGGGCTCCACAGTACACCAAAAGGGTCTTCTCTGGCCCCGTCCCCAAGGCCAACCTTCACCAGTCAAGTCTGGCCTAGCATCTCTCCCCAAGGGAGCAGTTTATTTGATGGGGAAGGGATGAGAGGTACTTTTGCCCATCAGCAGGACCACAGGGGAAGTGAAGCAAAGGGTGTCTCTGGTTAGGGGTCCTAGATGTCCCCTTTCCTTGCAGACAGACTCCTGGCAAGGTCACACAGGCTTTGCTAGCTTCAGGTCTCATCGAAGTCTACACCACCAGCTGGTTTCTTACTAGAAGGCAAGAGAGTATGTAAGGCAAAGAGGAAAAGGAAGGGACCAGGGTAGGGAAGACAGGTGGCAAGTACCTTTTGAAACCAGGGTTGACGAGAGACTCCCCTGGACACCGTCTCCTGACCCCAGACCCAGAGCTGCCTCTCTGGTGATCAAGTTCTGCCAGAAAATAGGATCAGGGAAATCTTGAATTCCAAAGAACCCTGGCCAGAACTCTATCCACATTGAAAGATTCTCCCTAGAGCGTGGGGCATCTGGAGAGGCAGTTCCGGGGAAAGAGCAGCCCCAGCCCACATGCCAGGCCTGCCCCTTACCTGGTAAGAACTGAGTGCCTGCTGGCTGGGTGCTCTTCCTGGGGCTAATGGCGGTCTCTTCTGTGGCTGGGAGAAAGCCATGGCATATCACTCAATGCCAGGAGGGTCTGTGAAAGCATGTCCCCGAAGGAAGGTACAGGTGCCCACACATACAGTACCTGCCAGCCGCCTCTCCAGGTTGCATACATGCTCTGCCAGGCTGAGAGTCAAAGCCTGCAGCCTGGGGGCTGCCTCTGGGCTGGGCACCTTGGAGAGGTCAAAGGCCAGGGCAGAGGTATCCCCTGAAAGGGTCATCAATGCTCTGTCCTCTTGCAGTCTTACAGTCACTGCCTGCTGTTGGCAGGCTGCCCTAAGGAGGGAGATGTGTGTTATGGCCACCATGTGCTATCACTACCCCAAGCTCCTCATTCACGTGGCCTCCCTAACTGGAACTTACCTGAACCGGGAATGGATATCCTCAGTCCCACTTAGGCCAAATCGGGCTTTCTGTTGGAAACACGTAATTGTCACTAAGTGCCCAGGACCCTGGACCCACTGGACATTCCAAACTGCCCAACCTTGGAAATGCTATTAGAACCACTGCCACGGGGAGGGGTGGGAGGTGGCAAGCTTCCAGATGTCTTCTATCCCCAGTGCAGTTACGCACGAGCGTCGCCAGGCTGTCAGGCGAGAAGCAGGTGCTCCAGAGCTCCGCGGCGTCCGTCACACTGGGTGGGAGGGGCTGTCAGACACTGCGCCCGCTGCGCTCCCGCACCCCACATCCCTACACTCCACTCACTAGAGGTTGAAATCGTCGCGGTCCCAGTCTCCACCATTCTCCGGCTCGCAGTAGCACACCAAGCGGGGAGAGCCGGAGCCCGGCGGCAGAATGCAAAGCGGCAGCGACAAGGGCGGAGGAGCCATGACAGCAGGGCGGTCTCGCCGCAAGAGCCAAGCCAGAGACAGGCTCAGGGCGCCTGCGCAGAAGTATGAACTCGGTGACTCGCAAGCTAAGACGTCCGTTCAGAGGCGGAACTTCTGGTGTCTAGAGGGACGGAAGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015184:ENSRNOT00000020497:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=FE(44.6=100)
A:
NA
C2:
PF134101=GST_C_2=PD(17.7=43.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGAGCCACACCTTTCTG
R:
AATGCACTGTCCAAGTAGCGG
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]