GgaINT1010104 @ galGal4
Intron Retention
Gene
ENSGALG00000008266 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chr4:14051075-14051733:+
Coord C1 exon
chr4:14051075-14051138
Coord A exon
chr4:14051139-14051658
Coord C2 exon
chr4:14051659-14051733
Length
520 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
AGCTTGTCTTTGTTTTCCAGGTG
3' ss Score
10.54
Exon sequences
Seq C1 exon
GGTTCAGATGGTGTCACAGGAACACTTGGATTCCCAGGACCTATTGGCCTCCCTGGTCCAAAGG
Seq A exon
GTAAGAAATCTTTCACCGTGTATTTGGTCTTTCAGTCTATGTGGTCCTAAGATTAATGGCTTAGACAAATGAGTTCTGGAAGCGTCCATTGCTCTCCAGTGACTGGCTCAGGAGTAGATGTTCCCCTGGTAGGTCATTCGTTCAGTCTCAAGCCAATTGCCTAAATACGTTAATATCCTTTGAAATCTCGATCATAGCACTTTATGAAACATGGTGGATGGTACAAGAGGCGCTCTTCTCTCAGGTCAACTTGAGTTAAAGATGTAAATTTCACAGCAGGATGCTGTGAAATTACTGATAAACGTTTGTCTTATCCTGCCCTGTGAGTGTATTTGTATGTTTATAAACAGCAACACATATTCAAACTCCTCATGTACAGCATTTACTATTGTCTTTGTTTACTTTGTGAATTTGCAGTATAAGCAAGGTTTGTTTTCGTAAACAAGACTACTGAGCAGGCTGAGAGTTGCTCCCACAGTCAGGTATGGAATGGCTGCCTCAGCTTGTCTTTGTTTTCCAG
Seq C2 exon
GTGACCAGGGAGAGTCTGCTGGTGTTCCTGGCACTGCTGGAGTTAAAGGAGAGCGAGGGGACCCAGGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266:ENSGALT00000013447:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]