GgaINT1010647 @ galGal4
Intron Retention
Gene
ENSGALG00000010971 | CSRNP3
Description
cysteine-serine-rich nuclear protein 3 [Source:HGNC Symbol;Acc:HGNC:30729]
Coordinates
chr7:19244665-19245814:-
Coord C1 exon
chr7:19245785-19245814
Coord A exon
chr7:19244836-19245784
Coord C2 exon
chr7:19244665-19244835
Length
949 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TACCTCTGTTCCTCTTACAGGTG
3' ss Score
12.96
Exon sequences
Seq C1 exon
CTCTGCAGTGCTACAGGAGCCATGGAGCAG
Seq A exon
GTGCGTGCCCTCTGAGCGAGCTCAGCTGCCCTTCTGTTCTTGGCTGGTTAGGGGTCTGCTTCCTCCTTCATTATCTGAGTTCATTTTAAATTTCTACCTTTGGTGCTGAATTTCTGCTGGAACGCTTAGCCTTATCATCTTTCCTTGCAACCTCAGGAGCTTATTAGGCATCTCAATTCTTAGAGTGGGGAGGAGAGAGATTGGGAAGCAATTAGTGTGTCTGACTGGAGAGGGGAATTTCTGAATTCCAAGGGTTTCTAAATTGATAATGCGGTCTTTGTGACTTCATTGCCTTATGTCTGTATTATTGAAATTATCAGAGAATACTTATGTTTCCTTACAGGTGTGATGTCAGCACTAATTACATTACATATATGTGGCATCAGGAACTGTAATATAATGTTCTTATTTAATTTCATCTCTGATGGTGAATGTTCCTTTCTTCCTTCCAAGTGAGGGTGTTTGAAGAGAAACTCCAAATTTTTCTTTGTTTGAAGTGTTCATCGTAACCTTTGCTGGAGCTCATGTCTATAGAAATCAGGGCTGCTAAGCACCCTGCAGCTGATGCACAATATTGGGCTGTTGCAGTCATGGTTCTCACCGGCCTGTAGAAAGTCTGTATTTAAAATTAAATTGTTGTGCTTTTCATGAAAAGAGGTAACTTGGAAATGACAGAAATAGCCCCTGAAAGCAATCTGCTGCATGTTATTCTAACAACACATCCATCTCCATAGGTAGCAAGTTAGAATATAATGTATGAACGTTTGTTTTTTTTTCATGTGGCTTCACTGTCTCCTAATTAATTATACCTAATCACATACCAAATGGCTATTTAAGATGAGATGTGGCGACTTATTGGTACTTCTAAATAAAAATGACTCTGGAGAGTACGACTGAATATTCTGCACTTGGATGTTTCCATACTTCATTACCTCTGTTCCTCTTACAG
Seq C2 exon
GTGCATGTGACAGCATTGCAGCAATGAGCGGAATTTTGAAGAGGAAGTTTGAAGAAGTTGATGGCTCCTCACCTTGCTCCTCTGTACGGGAATCAGACGATGACATTTCTAGCAGTGAAAGTGCTGACAGTGGTGATAGTGTCAATCCATCTACTTCTAATCACTTTACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010971:ENSGALT00000017873:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.632
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAGTGCTACAGGAG
R:
GGGTAAAGTGATTAGAAGTAGATGGA
Band lengths:
201-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]