GgaINT1010888 @ galGal4
Intron Retention
Gene
ENSGALG00000010153 | CYP21A2
Description
steroid 21-hydroxylase precursor [Source:RefSeq peptide;Acc:NP_001092828]
Coordinates
chr16:39195-39537:-
Coord C1 exon
chr16:39430-39537
Coord A exon
chr16:39381-39429
Coord C2 exon
chr16:39195-39380
Length
49 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TAACACGTGTGTCCCCACAGGGC
3' ss Score
11.06
Exon sequences
Seq C1 exon
GTGCTGCCCAACGCAGGGCTGCGGGAGCTGCTGCGCCTGGTGGAGCGCCGCGATGCCTTTGTGGAGTCCCAGATCCGATGGCACCAGGTGGGGAACGTGGGGACACAG
Seq A exon
GTACAGGGGGGGGACAGGGCCCCAGGGGGTAACACGTGTGTCCCCACAG
Seq C2 exon
GGCTGTGCGTCTCCCCCCAGGGACACAGTGTTGGGAGCACTGCTGGGGGGGGACCCCACTGTCCCTATGGGGCCGCTGGGGGGGGACCGCCTGCACATGGCCCTCGTGGATCTCTTCATCGGTGGCACCGAAACGACGGCAGTGGCTCTGCTATGGGCTGTGGCCTTCCTGCTGCACCACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010153:ENSGALT00000016503:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.0=100)
A:
NA
C2:
PF0006717=p450=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGAACGTGGGGACA
R:
GCCACCGATGAAGAGATCCAC
Band lengths:
147-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]