GgaINT1011120 @ galGal4
Intron Retention
Gene
ENSGALG00000025712 | DEF8
Description
differentially expressed in FDCP 8 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:25969]
Coordinates
chr11:18295000-18295480:+
Coord C1 exon
chr11:18295000-18295113
Coord A exon
chr11:18295114-18295399
Coord C2 exon
chr11:18295400-18295480
Length
286 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
GGCCCCCTGTGCCCCCGCAGAAG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GTGTCCCGCTGCAGCATGCGGTACCTGGCGCTGATGGTGTCGCGGCCCGTGCTGAAGCTGCGGGAGATCAACCCTCTGCTCTTCAACTACGTGGAGGAGCTGGTGGAGATCCGG
Seq A exon
GTGAGCGTGGTGTGGCCGTGGGTGGGGCCCAAGGCTGGCAGGGGGGGGCTGACATGGGGCAGTGGCAACATTAAGGATAAACTGGGAGGGTGCCTGAACTGCAGGGCTGAGACTGACCCGGCCTTGTCCTGGCACTGTCCTCACCCAATGCCCATCCTTATCCTGTCCCATCCCCACACCACACCTGTCTCATCGCTGTCCCTGTCTCCATCCTGTCCCTGCCACCACCTTCTCCCTATCCCTCTCCCCACTCCCATCACGTCCCCGGCCCCCTGTGCCCCCGCAG
Seq C2 exon
AAGCTGCGCCAGGACATCCTGCTCATGAAGCCATACTTTATCACCTGCAAAGAGGCAATGGAAGCACGGCTGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025712:ENSGALT00000044355:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(50.0=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCCGCTGCAGCATG
R:
TGCTTCCATTGCCTCTTTGCA
Band lengths:
180-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]