RnoINT0046334 @ rn6
Intron Retention
Gene
ENSRNOG00000000264 | Def8
Description
differentially expressed in FDCP 8 homolog [Source:RGD Symbol;Acc:1309008]
Coordinates
chr19:56252424-56254462:+
Coord C1 exon
chr19:56252424-56252537
Coord A exon
chr19:56252538-56254381
Coord C2 exon
chr19:56254382-56254462
Length
1844 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CCTGTTGTCTGAGTTCACAGAAG
3' ss Score
1.54
Exon sequences
Seq C1 exon
GTGTCCCGTTGCAGCATGCGTTACTTGGCACTGATGGTGTCTCGGCCAGTGCTCCGGCTCCGGGAGATTAACCCCTTGCTGTTTAACTATGTGGAAGAACTGGTGGAGATCCGG
Seq A exon
GTGAGGCTGGGGCCCTGGTAAGGGTCCGGAGGGATTTGTCTCCCTGTGGGAGTGGGAGGTATGCCTCATTCACAGGCCTCTTAGCTGTTGGATCAGCAGGGTTGAAACTGTATTAAGTTCCCTAATAATCTCATTGTAGAGTAGGGTGACGTCTCATCCCTGTGATGTTAGCATTGGGAACTGGGGTAGAATGGTCACCAGTATGAGGTTAGCCTGAACTGCACAGTCAGAGCTTGTCAGAAAGTGTGTGCGTGTGTGTGTGTGTGTGTGCGCGCGCGTGTGTATGAGAGAGAGAGAGAGAAGAGAGAGTTAATTTTAATTCTATCCACTAATCAATTTTCTATTTACCTCCCTACCACCTGTCTACCTAACTTACCTGAAAGGCTGGGAATGTAGCTTTGATGATAGAACGCTAGCTTAGATGCAGGGAGCACAGGTTCAATTCCCAGCAGTGTGTGAATCTGGCATAAGAGCACATGTGACTCAGGCTGACCTTGAATTTGATTGAAAGCTGAGGTTGGTCTTGAATTCCTGATCCTCCTGCTTCTACCTCCTAAGTGTGGGATTAGAGCACGTCTGTGTTTCTATCCTTATATAATAGCATATTTTCTTCAGCTTAGTAGAACCAACATATTATTACTATTTTTTGTTGGTTTGTTTTGTTTTTCTTGGTTCTTTCCCCCCCCCCCCCCCCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCACTCTACCACTGAGCTAAATCCCCAACCCCTGTTTTGTTTTTCAAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCAGTCTGTACACCAGGCTGGCCTTGAACTCAGAGATCTGCCTACCTCTGCCTCCCGTGTGCTGGGATTAAAGACATGTGCCACCACCTCCTGGCTGAACCAAAACATAATATACAGTTAACATACAGAATTGTCAGGATATGTTACTCTTTTTGTGTTCTCTATGATTTTGAACTGTAGAGTGTATCCTACACTTACAGCCATCTAAGTGATGGCTGGGCATTTCAGCAGCTCTACATGACTGTTGTTCACTCGGACCAGAAGAGTCAGGGCTGATGTCAGATAGAGCTGTAGTTCAGGCAGGAGTTGATGATGTCATGAGCAATGTAGAGAAGTCTTTTTTGTCTTTAAAGATTTATTTGTTTATCTTATGGACACAAGATATGAGTGCACTTTTGCAATCTTCAGACACACCAGAAGAGGGCCTTGGGTCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTAGAAAGATCTTAGAGTCCATGTTTTAGGGGAAGAGTCTGAGGCAGAGCTGGGTGAATGGTCAAGGCCAAGGCATTGATGGGAGATATGGTATCTACCTAGGATCCACACTATGTTGGCTATGACTTTGTGCTGTCATGAGGCAGGAGGATGGGCTCAGTGCTTGCCTGTGGGACTGGGCTAATATGAATGGGAGATCTCAAGAGCTACGTTTAATAAACCCAGGTTCCTATGTAGCCCCCAAAGTGATGTGTACTTGAGGCTGGATAGACCAGCCAAATGTAGGACCACCTAGTGGAGCTTGAGGGCACTTTCCCCAGTCCCTACTGACCTTACTCTCACCCTCAGTATAAGGGAGGAGAAGCCACCCTGTGAACATGGCCCCTATGAAGCCAGTAGAGAAGCAGCCCCTTAGCCTTACAGACCCAGCTGTGGTGCCACCCGTGTGTCATGGCTGATATGCCCACCTGTTGTCTGAGTTCACAG
Seq C2 exon
AAGCTGCGCCAGGACATCCTGCTCATGAAGCCATACTTTATCACCTGCAAGGAGGCCATGGAGGCACGACTGCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000264:ENSRNOT00000000281:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(18.0=100)
A:
NA
C2:
PF139011=DUF4206=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCGTTGCAGCATGC
R:
GCAGTCGTGCCTCCATGG
Band lengths:
186-2030
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]