GgaINT1011308 @ galGal4
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:166389-166889:-
Coord C1 exon
chrLGE22C19W28_E50C23:166809-166889
Coord A exon
chrLGE22C19W28_E50C23:166517-166808
Coord C2 exon
chrLGE22C19W28_E50C23:166389-166516
Length
292 bp
Sequences
Splice sites
5' ss Seq
CCTGTATGT
5' ss Score
4.27
3' ss Seq
GGTACCTTTCTTATCTTTAGGGC
3' ss Score
8.81
Exon sequences
Seq C1 exon
GTTATTCCTCTGAACTCAGCTGGCTCTCCAGTGGGTGATGTGCCATTTGTCCGTTCTGGCTTGCTGGGCTTTGTTGGACCT
Seq A exon
GTATGTAACGTAGCTTCTGAGCTTCTGATAGCTTGTGCTAATGGCCTAGAATATTTAAAAGAAGAGCATTTGTGTTTGGAAACGTGTGTATGTGGTTTCTTGCTGTGAGTGACAAGATAGCTGAGAGAGAATTCTGTTGATTTAGCTACTGAAATCAGTAAGAGTTGCAGAATATGCAAATCCTGGAATTTGTTTGTCTGCTTTTATGTGTGTGTGTATATATATATATATAAATGTCACTGTCATATATATATATATATATGTCGCTGACTGGTACCTTTCTTATCTTTAG
Seq C2 exon
GGCAGTTTGGTGTTTGTGGTTGGAAAAATGGATGGATTGCTGACAGTCAGTGGGCGGAGACACAATGCTGATGACATTGTCGCAACTGGGTTGGCAGTAGAGTCAATAAAAACAGTTTACAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(5.5=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTCTGAACTCAGCTGGC
R:
TCCTCTGTAAACTGTTTTTATTGACT
Band lengths:
204-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]