Special

MmuINT0049580 @ mm9

Intron Retention

Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100008873-100011867:+
Coord C1 exon
chr15:100008873-100008953
Coord A exon
chr15:100008954-100011739
Coord C2 exon
chr15:100011740-100011867
Length
2786 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GAATCATTGCTAACTTTCAGGGT
3' ss Score
6.51
Exon sequences
Seq C1 exon
GTGATTCCAGTGACTTCTTCAGGCTCTCCTGTAGGGGACGTACCCTTCATCCGGTCAGGGCTGCTGGGATTTGTAGGGCCT
Seq A exon
GTAAGTGACGGTTCCTATTGATTTTGCAACATTTGATCTAAAAGCATTTGAACTTGGATTCACAGAACTGAACAGATTCCGAGTAGTGAAAGGGTGTCACTGGCCCTTTAACAACGATCAAAACGGCTCCTCCTCCTGTTTCTTTATTTAGACAAGGTCTCTGCAAAGCCCTGCCTGGTTGGAACTAGTGGAGATCCCTACCTCAGCCTCCCAAACGCTGGGATTAAAAATGATGCACTGTCTTTCAGACTGATTGTAGAAGACTGTCACAGGAATGAGCTAATGTTTTCTGCGTCTCTTGCCTAAGTTTCTGTGACTCCTACAGACTAAGGCTTCATATGTATCCTATATTTTTAAACATTTCACTTATTCTTACTACTTTTCTTGATTTATGTTAACATGCTCTGAGAAGTTAAGAGGAGGGAGGGGGGAAGGTTACTTCGTAGCCAAGGGAAACTGAGTGGCGAATGTAGAGAGTGTTTTCTTTTTCTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGAGAGTGTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAAACCAGGCTGGACTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCACCACGCCGGGCATGAGAGTGTTTTCTTAAGGATTCTCAGCAGTGCCCACCCTGGGTCATTGTAAATTCTTAGAAAACAGTTCGTTACCTGGCAAGTGTTATTCATGGTAGTGGTCTAGAGAGACAAGGACCCAAAAGCCTGTTCTCAAGGCACATACTGAGCCTGAGCAGGACACAAAGGCAGCAGAGAGCCAGGCTCTGATGGCCAGTGGGTAGGGCAGTGGCGAGCCATGGGGTAGTCACTATCCTGTCAACTCATACCCTCCATCTGTCGATGGCTCCTTCCTGCCCATCTCCTCCTCCTCCTTCTCCTCTTCCTCCTCCTAGCGCTCAGCTCATGTAAGAGCATGTGACACTGAGCCCTTAACACTGCAGTGCAGCTTCAGCTGTCTCAAGAGCCCAAATCTTGAGCGAGCTTGCTGCACTGCTATTGAGGTCCAGGACCCAGCTCCAACCGTCAGTCTGAAACAGATAGACTGTTGTCCGCTCTCTATGAATGATCCCCTGAACCCCATGTAAAGGGTCTGGTTGTGTCTGGCCTGAACCAGTCCCATGGTCAGATCTAGCTGCAAGGAAGATGAAGATGGAAATACCATGTCAGCTAAACAGCCTCACTGTGAAAGATTTGGAGAAGCAGGCATCCCTTCTCTCTCTCTTTTTTAAGGATTTGTTTCTATTATGTTAAATGTATATGCAAGTCTACATGCATAGCAGTGTTGGAGTTAAAGGAGCTGTGAGCCACCAGACTTTGTGCTGGCAGCCACACTCATGTCCTCTGCAGGACCAGGACATTCCCTTAGCCGCCTCTCTCTCCATTTACCACCAGCAGACTGTTAGAAGTGTGTCCCCTCTGGCTCTGGCGTTGTGGAGTTGGCTGGCTTCCTCTGGCACTGTGGGTAGACCAGCAGCTTCCTGTGCATTGACATTCTGTTTTTCTGGCTTAGCCCAGTCATTGTGTGGCACTACACTGTGCTCAGCAAGAGTGACATGCTTGTGGAGGTAACTGCCAACTCGAGAGGACATGCGAAGGGCCAATGGACCCAGGGGCCTGCTGCTCTGTTGTCCAAAAATCTGCAGGGTTCTTAGACCTTCTTGGGTATGTGTTTCTGATCTTGCCAATGGAGACAGTGTTACCCTTGCGAGCTCAAAGCAACTATTCACACACTAAAACCGTTGGCTCTCTCTAGCTCCAGGAGCAATAAAGTAACATTTCTCTCCCTGGTATTCACCCTGTGCCAACTACAGAAGAGCTAATGCACACCTGTGGCTGGAAAAGGGAACTCTGTGTGTGAGCACAGTTTCTCCCCTGTGAGAGTGAGATTTCCCCTAAGAATAAATAGGAACGGATTAATCTCTTATAGACGGTAAGACCTCAGTGGGTGCTAGCCAGATGCTCAGCAGGTAGAGGCGTCCCTGGGACCCATTGGGTGGAAGGAGAGGACAGTTCCTGCAAGTTGTCCTCTGAGTCACAGCGGGCAGTGGCCTGCCTGTGCCCACACACATGCACACAGATCGAGCCTTTTAAAGACTTGGTGGCTTTAAGATGTGCTTTTTTACTAATTCTAAAGAAAAATAATAATAAATCCCATAAACTATGACATTATTTTCTTTCGTATAAACACGTTTTTTGTGGTGTTGGGAGTTGAACTGTGTACATGTTTCACAGGTACGTTTCTTAGTGTTTGGTTTGGTTTTGTTTAGTGACATTTTCATGAAAACAGGAAATGTAAGGTGTCTGTTTTACCCTTTAAACTATGGAAATGAAGGTGAATCATTGCTAACTTTCAG
Seq C2 exon
GGTAGCTTGGTGTTCGTGGTTGGAAAAATGGATGGATTACTCATGGTCAGCGGCCGAAGACATAACGCCGATGACATTGTTGCTACTGGATTGGCTGTGGAGTCCATAAAGACCGTCTATCGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-Dip2b:NM_001159361:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0050123=AMP-binding=FE(5.5=100)

							
A:
NA

							
C2:
PF0050123=AMP-binding=PD(3.4=37.2)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000097777f1397A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000023768, ENSMUSP00000097777, ENSMUSP00000104599
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr12:50704221-50706537 
ALTERNATIVE
HsaINT0048124
(DIP2B)
Human
(hg19)
chr12:51098004-51100320 
ALTERNATIVE
HsaINT0048124
(DIP2B)
Rat
(rn6)
chr7:141844742-141846969 
ALTERNATIVE
RnoINT0047743
(Dip2b)
Cow
(bosTau6)
chr5:29387301-29389355 
LOW PSI
BtaINT0049315
(DIP2B)
Chicken
(galGal4)
chrLGE22C19W28_E50C23:166517-166808 
ALTERNATIVE
GgaINT1011308
(DIP2B)
Chicken
(galGal3)
chrE22C19W28_E50C23:141534-141825 
ALTERNATIVE
GgaINT0001073
(DIP2B)
Zebrafish
(danRer10)
chr23:27451863-27452299 
LOW PSI
DreINT0057200
(dip2ba)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"