GgaINT1011409 @ galGal4
Intron Retention
Gene
ENSGALG00000027677 | DLX3
Description
distal-less homeobox 3 [Source:RefSeq peptide;Acc:NP_990135]
Coordinates
chr27:2990635-2994344:+
Coord C1 exon
chr27:2990635-2990825
Coord A exon
chr27:2990826-2992673
Coord C2 exon
chr27:2992674-2994344
Length
1848 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CCCTATCCCTCCCCCTCCAGGTG
3' ss Score
12.91
Exon sequences
Seq C1 exon
TGTCGGTGAAGGAAGAGCCGGAGCCCGAGGTGCGGATGGTCAACGGGAAACCCAAGAAGATCCGCAAACCCCGCACCATCTACTCCAGTTACCAACTGGCCGCCCTGCAGCGCCGCTTCCAGAAAGCCCAATACCTGGCGCTGCCCGAACGCGCCGAGCTGGCGGCACAGCTGGGGCTCACCCAGACCCAG
Seq A exon
GTAGGGCTGAACGCCCCCTCCCCGATCCCATGTGGGGGGCGGCGGGGTTGGGGTCGGGGTCGGGGCTGCGTCCCTCCCCGCGAGACCGGAATCCACGTGGGGTTGGCGTGGCTCAGTTCGGGGTGTCCCTTTGGGGTGGGAGATGGGAGCGTTTGGGGGACCCCTGGGATGTGGGGAGCCCTGGGGTGGGCGATCCCCACTTGTAGGGCGCAGGGAGCCCCCGGTGCCCCCGCGCGGAGCCGATCCGCGGTGCTGAGGGTGGGGGACAGACTGTGCCCCCTGTGGATGTTGGGGGACCCCTGTGGATGTGGGGCTTTAACCCCCCCCCCCGAACACAGCTCTGCCCCTCAGCCCTCTCAGCACCCACATGGGCGCAGTGCTGGGGGTGGTTGGGGCTGCGGANGGTGCCTCGGACCCCGATCCCGGGCTCCATGTCCCCCATTCCCCAGGATTAGGGAATGTGGGACGTTTGGCACCTTGCTGGGGGGATGGGGGGGGGGGCTCTGCCACGTCAGGTGGAGCTCCACCAAGAATGGGTTTCTCCTTCCCCGCGTTTCCACACCTTCCTCCCATCTCTGGGACCGAAAGCTTCGCTTTCGGGGCTTCCCAACCACGGCCACAGTCCCGACCTCGCTGGCGTGACAGCAACCCCACAACCCGCCCCATCCCCATCCCACCCTGCTGCCCTCCCTGCCTGCGGGCCGGCGCCGGCGCCCTTGTGCCGCCCTTGGCGGGCGCTCCCCAGCGCAACCTTCCTCCTCCTCCCCTGGGCGATGAAGCAATCGGGGCCGCTCGGCAAAGGGCTGACGGAGCGCGTCACCCAGAGGGACATCCTGTTTGGGTGACACCGCCGCTCCCCGCGCCCCGGCCCCAAAGGCACACGGCCTCACCCAACGCTGGGACGCTCCCGACGGCCGACGTGCGTGCCGTGATGGCTTCACGCAACGCCCACAGCTCGGAGGCGCTGCCGGGGACCCCACGGCACCCACAGCCTCGGGGACGTTGGGTGCTGGCCCCATAGCACACAGGGACCCCACGGCACCCACAGCCTCGGGGACGTTGGGTGCTGGCCCCATAGCACGCAGGGACCCCGCGGCACCCTTAGCGCGGGCTCTGCGGTGTGGTGCGTCTCCAGAATGCCCACCCTACAGCTGCCTGCCCGTGGGGTTGTCCGTGGTTCCCCTCTCAGTGTTGACTTGCCACAGTTTGGGGTGTCTTTGGGGTCCCTGCAACGCTGGTGCTGGACGTCGGTTCTGCACGGCGTGTCTGGGGTGTCCCAAATGCAATCGGCAGCACTGACTTCCCGTGGTGCGTGGTGTGCATGGGGTCCCCATAGCACCCGGATCATAGGTGGCTTCCATCGCCGGGTCCCCGTCACACAAACACCACGACTGACCTCCTGTATGGCTCATGGTGTGTGCTGGGTCCCCACGGCACCCACACCAGATGACTTCCCATGGGGTCCCCACGGCACCCACACCAGATGACTTCCCATGGGGTCCCCATGGCACCCACACCAGATGACTTCCCATGGGGTCTGGGGTCCCCACGGCACCCACATCACCGGTGGCTTCCCATGGGGTCTGGGGTCCCCATAACTCCCCTATCATAGATGGCTTCCTACAGCACGTGGCACATGTAGGACCCCCATGGTGCCCACATCACAGGAGGCTTCCCACGGCTCTGGGGTCCCCATGACTCCCACCCGTATCGGGGTGACTCCCGGTGCTGTGTTCCCACAGCCCCACACCGCCATTCCCTTCCCGCGTTCCCTGGACCCCACATCCCACTCTCCCACCCCCTCCTGCCCCACCCTCACATCCCCTCACCCTATCCCTCCCCCTCCAG
Seq C2 exon
GTGAAGATCTGGTTCCAGAACCGCCGCTCCAAGTTCAAGAAGCTCTACAAGAACGGCGAGGTGCCGTTGGAGCACAGCCCCAACAACAGCGATTCCATGGCCTGCAACTCCCCACCGTCGCCCGCCGTTTGGGACAGTGCCACTCACGGCGGCGCGCCGGGACGGACCCCCCTCCCGCAGCCACTGCCCTACAGCCCCTCGCCCGCCTTCCTGGAGGAGCACAGCCCCTGGTACCACCCGCAGAGCCTCGCCGCCCCCCACCAGCCGCCCGCCGCCATGCACCACACCTCGCCGGGGCCGCCCCCCAACCCGGGCGCCGTTTACTAACCGTGGGGGCAGAGACAGTGCGGAACTCCTTCTCTCTTCCCTTTCTCCCCCCTCAGCCCCCCCCCATCCCCGCACCCTCAGCCCCCCAATGATGATTATTTTTTAAAGTGTTCCAGGACACGCGCCCCTATGTACCCACCTCTATATCCTCTCCTCTCCCAGCTCATCTCAGGAACAACGGGACTGCAAAGGGTTGAACTCGTGAGCTCTGCGCCCAGGGGACACCACCGCTGCCCCCCAACAACTGCATCCCACCCCCCCCCCTCCTCCACCAGCTGTGTCCCCACAGGAGAGACGTTTGGGTGACTGTCACCCCACCTTGGGGTCCCCATGGAGACGCTGTGTGGGATGGAGACGTGAGGACCAAAGCGGGGTGCCGTCCCATCCCCACCTGGAGCAGGGGACGCCCCTCACCCTCATGGCACCCAAAATCTGGCCACCAAGAGCGGTCTGTGGACTATGGGTACTCCATGGGGTGTGGGTTCTCTGTGGGGTGTGGGTGCGCCATGGGGCCTTGGGTGCTCCGTGGGGCTTTGGGTGCTCCATGGGACCATTGGTTCTCCATGGGGCCGTGGGTTCTCCATAGGCTTTCCATGGTGCAATGCGTTCTTCATGAGGCTGTAGGTGCTCTATGGGACCATGGGTTCTCCATGGGGCCATGGGTTCCCTGTGAGGCCATGGGTTCTCTGTGAGTTCTCCATGGGGCTGTGGGTGCTCCGTGGGGCTTTGAGTGCTCCATGGGACCATGGGTTCTCCATAGGATCTCCATGGGACCATGGGTTCTCCATGGGGCTGTGGGTACACCATGGGGCCATGGGTTCTCCGTGGTTTCTCCATGGGGCCGTAGGTTCTCTGTGGGGCTGTGAGTTGTCCATAGCGCCGTGGGTCCTCCATTGGACCATGGGTTCTCCACGGGTTCTCCATGAAGCTGTGGGTCGTCCATGGGGCCATGGGTTCTCCACAAGGCCATGGGAACTCTATGGGGATGAGGGTGCCCCATAGGGCCGTGGATGCCCCATAGGGCCATGGGCAGCTTCAGAGGACCCCAACCCTTGGGGACGACGCTCAGGCGACGAGGCGGTTATTTAACAATTAAAAAAAATAATAATAATAATTAATTAAAAAAATTTAAAAAAAAATTAAAAAAATAGAAAAAAAAAAGAAGGGGAAAAAGGGGAGAAAAAGGATTTTAATATTTAAACACTTTGGGAACGGCTTAAGTTATTTTTGAGAGCAAAGGGTCTGCTTTGTCAGAGCGCCTCCACCGGCGCCATTTAAGCGAACAGTGAAGAGGAAGGTGTATTTTTTTAAAAAACCCCACCACGCATTCAACACACCAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027677:ENSGALT00000044914:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=NA C2=0.806
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(73.7=65.6)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=11.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCCCGCACCATCTACTC
R:
CTGTGCTCCTCCAGGAAGGC
Band lengths:
351-2199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]