GgaINT1011494 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10076500-10076980:+
Coord C1 exon
chr18:10076500-10076733
Coord A exon
chr18:10076734-10076810
Coord C2 exon
chr18:10076811-10076980
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
TGCCTCCATCCATCCCACAGATC
3' ss Score
10.71
Exon sequences
Seq C1 exon
GCCGAGCTGGAGGAGGAGGCAGAGCTCAGCAGGATGCGGGAGGAGGTGATGTCGCTGGCGGCTGATGCCATGGCTGAGGGCGAGGAGCACCGCGCCAGCTTCGAGGAGTACGCAGAGCTGTGGCTGGAGAGCCCCGAGGAGTTCCTGCAGCACTTCCTCACCTTCCAGAGCACCGGAGAGCCCGAGGCACCCCCACATGAGGGACCTCCATCGCTGCAGCTCTTCCAGGAGGAG
Seq A exon
GTACGGGGAGGACATGGGGGCGCGTGTGCCCGGGGACTGCCAGCTGCGGGCTGTGACTGCCTCCATCCATCCCACAG
Seq C2 exon
ATCGATGCGTGCGAGGAGCTGTGCCAGGAGGTGTCGGGCTTTGCCAGCACCGTGGTGTTCAGGGGGTGGCTGCAGAGCGACTGCCGCCCCTTCAATCAGGTGCTGCTGAGTGCTGCACGCAGCCGGGGCCGGGCACTGCGGCAGCACCTCACCGACCACGTCACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCAGAGCACCGGAGAG
R:
TCAGCAGCACCTGATTGAAGG
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]