RnoINT0048792 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107113003-107114271:-
Coord C1 exon
chr10:107114014-107114271
Coord A exon
chr10:107113173-107114013
Coord C2 exon
chr10:107113003-107113172
Length
841 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCCATGGCTGTGTTGGGTAGATT
3' ss Score
4.1
Exon sequences
Seq C1 exon
CAGTCAGACCTGGAGGATATCACAGACCTCATTGAGATGCGGGAAGAATTGTCCAGCCTGGTCATCGGGGCCATGAAGGTGGCCGAGGAGTACCAGGACTCCTTCGAGAGGTACTCCTACCTCTGGGTGGATGACCTTCAAGAGTTTATGAAGAACTTCCTCATCTTCGGGCACGCGCCCACCCCCGAGGAGCTGGACACCAAGATTGACGACACCATCCCCAAGACACAACCCACCCTGGCTCAGTTCCAGCAGCAG
Seq A exon
GTGTGTACGGTCCTGTCGTCCTCCCCTGTCATCTCCTTCGTCCTCTGGTTGGGCGACCCCCCCAGGCCTCAAAGTCAGGTGGCCTGATTGTCATGTCGGTTTTATATTTGCTCCTGGTGAGGCCAGGGCGGGGGGATAACATGCCTTACCGCACCACACCACAAGGGGGGAGCACCAGTGTCCCAGGAGGCAGCCAGGGAGAGAAGAGCCCTCAGCAGGATCTACCAGACTTGTAGTGTGAATGGCTTTGGTTAGCTCAGGCGAGGGCACTTTGCTGAGCTGGCTGGTGTCCCATCCTGAGCATAAGAGTCCCCAAGAGCCAGATAAGAGGTGTTGGGAGCCCCACACTCAGGTCCGCTCCAGGTGACAGGGTCTGCGGTCTAAGAATCAGCCTCCAGGGTAAGCAAGAGCTCGAGTGTCAGGGCATTGGGAATCTAGAAACTGAAGCAATCCAGTCTCTCCAGATCTCCAGACTGGTCTTGGGCACAATGAGGAGGAGCCCTCTCCTCCCCCACACCACTGAGAAGGAAGATGGGATGGCCCAAAGTCTGCAAGTGCTCCCATGAGTTAAGGGCCACATTTGGGAATCCCCTTCTGCTCCAGAAGCCTTGCCGTAGTCATCCGATCCCGTCCTCTTCTGTCCACCTGTCCCTTTCTAGAGGTGGGGATGGTAGGAGCTCTGGGGTGTTGGGACAAGGGCAAACAGGTATCGGAGTCTCGGGCCTCTCTTGAGCTGCGCCCTGGGCCACCTGTCTGCCCTTCACAGTCAGACAGAAAGCAGCGCCGGCTCGTGGGGGGACAGCCAGCCATGGCTGATGGAGCCCATGGCTGTGTTGGGTAG
Seq C2 exon
ATTGACTCCTATGAGAAGCTGTACGAGGAGGTGTCCAGGTGCGAGAACACCAAGGTTTTCCACGGCTGGCTGCAGTGCGACTGCCGCCCCTTCAAGCAGGCCTTGCTCAACACCATCAAGCGCTGGAGTCTCCTGTTCAAACGATATCTGAGCGACCATGTGATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTCATTGAGATGCGGGA
R:
TTGATGGTGTTGAGCAAGGCC
Band lengths:
354-1195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]