GgaINT1011497 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10077049-10077457:+
Coord C1 exon
chr18:10077049-10077271
Coord A exon
chr18:10077272-10077340
Coord C2 exon
chr18:10077341-10077457
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TAATGCAGTGTGTGATGCAGGAG
3' ss Score
2.02
Exon sequences
Seq C1 exon
CCTGCAGGAGCTGGAGGCCTTCATCAAGGAAGCCACCGCTGGCTTGAGCAAGCAGGTGCAAGAAGGAGACTATGATGGACTAGTGGAGGTGATGGGGCACCTGCTGAGGGTGAAGGACCGACAGGCAGCCACCGATGGCATGTTTGGGCCCCTGAAGGAAACCATTGCATTGCTCAGCACGTATGGGGAGGAGATGCCCGAGGAGGTGCACCAGCAGCTCCAG
Seq A exon
GTGAGTGGGTCAGGGTGCGGGGCGAGGTGCGGGCTCATGGGGCGGGCTGTAATGCAGTGTGTGATGCAG
Seq C2 exon
GAGCTGCCCGAGCAGTGGGACAACACCAAGAAGCTCTCCTTCCGCGTGAAGCAGAACGTGGCACCTCTGCAAGCAAACGAGGTGAACATCATCCGCAGGAAATGCCAGCAGTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGAAGGAAACCATTGCA
R:
GCGGATGATGTTCACCTCGTT
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]